Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05387 ATGGATATCAAGGTTAAGAAAAATGAGTCTGCAAACCTCAATGAATTAAGAAAGGGTCCATGGACGTTAGAAGAGGACACCATTCTTGTTAATTACATTACATCCCATGGTGAAGGTCACTGGAACACTGTTGCATCTTCTGCAGGCCTGAAGAGAAGTGGGAAAAGTTGCAGATTAAGGTGGCTAAACTACTTGCGTCCCGATGTGCGCCGTGGAAATATCACACTTCAAGAACAAATTCTTATTCTTGAACTCCACTCTCGCTGGGGCAATAGGTGGTCGAAAATTGCACAGCATCTTCCGGGAAGAACGGACAACGAAATAAAGAACTATTGGAGAACGAGAGTGATCAAGCAAGCTAAGCAGCTCAAGTGTGATGTCAATAGTAAACAGTTCAGAGATGTCTTGCGTTACGTGTGGATGCCCCGTCTGCTTGAACAGGTTCAAACCGGACCCGGTTATTGCGAGCCGAAAAGACCCGAATTCGTTCATCACCACCAGAACACATCGCACAGTTCAGTTTCAGGAACAGAATGGCCAAAAACAAACAACTCCTCAGAAACTTCATCAATGGAATTCCAAGCTCCTTCGATTTCGGATCATGATGTTTCAAAAGTGTTGCCGAGTTTCCATAACCAGGTTCCTGAACAAGGGAATAGTAGTAGTGGTGGTGGTGGTGGTGATGATGACTGTGATGACTCGTTGGAGACTTTTTTGAACGACGAGAGCATGTGGTTTTTGGAACAACTTTCTGAAGATTTTGAAATAAAATACAATTTACTTGCGTGA 789 0.4347 MDIKVKKNESANLNELRKGPWTLEEDTILVNYITSHGEGHWNTVASSAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQILILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDVLRYVWMPRLLEQVQTGPGYCEPKRPEFVHHHQNTSHSSVSGTEWPKTNNSSETSSMEFQAPSISDHDVSKVLPSFHNQVPEQGNSSSGGGGGDDDCDDSLETFLNDESMWFLEQLSEDFEIKYNLLA 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05387 262 FunFam Myb transcription factor 18 70 - -
Vivi1g05387 262 Gene3D - 75 116 - -
Vivi1g05387 262 FunFam MYB transcription factor 75 138 - -
Vivi1g05387 262 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Vivi1g05387 262 CDD SANT 20 65 IPR001005 -
Vivi1g05387 262 SMART sant 70 118 IPR001005 -
Vivi1g05387 262 SMART sant 17 67 IPR001005 -
Vivi1g05387 262 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Vivi1g05387 262 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Vivi1g05387 262 MobiDBLite consensus disorder prediction 167 197 - -
Vivi1g05387 262 MobiDBLite consensus disorder prediction 211 234 - -
Vivi1g05387 262 Gene3D - 18 70 - -
Vivi1g05387 262 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Vivi1g05387 262 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Vivi1g05387 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Vivi1g05387 262 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 195 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vivi1g05387 262 MobiDBLite consensus disorder prediction 165 197 - -
Vivi1g05387 262 CDD SANT 75 114 IPR001005 -
Vivi1g05387 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05387 Vivi-Chr1 117937138 117938546 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05387 15 248 MYB Transcription Factor Family AT2G47190 50.593 7.15e-78 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1g05387 Myb_DNA-binding 7.2e-15 CL0123