Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05386 ATGGTTACCAGAAGTTTATCAGATTGTGGTTCATTAGCAACAAATGTAAGTGAAGAAGATATTATGGTAATAAAGAAAGGTCCATGGATAGAGGAAGAAGATACTGTTCTGATGAACTATGTGGCTGTCCACGGCGAAGGTCACTGGAACTCCGTGGCCCGCTGTTCGGGTTTAAAGAGAACGGGAAAAAGCTGCAGATTTAGATGGTTGAACTACCTGCGACCAAATGTTCGACGTGGGAATATTACTCTCCAAGAACAGCTCTTGATTCTTGATCTCCATTCTCGGTGGGGCAACCGGTGGTCTAAAATAGCGGAACAATTGCCGGGAAGAACGGACAATGAGATAAAGAACTACTGGAGGACAAGAGTGGTGAAGCAAGCAAGGCAACTCAATTGTGATGTAAACAGCAAACTCTTCAGGGACACATTGCGTTTTGAATGGATTCCCCGTCTCATTGAGAGGATCCAGTCTACTCGTGCAACTGCAGATACTAATTTATACATTCAACGACAAACCAGCAATTGTAACAATACTAAAGCGCACAGTGATACTTGTACAAATGCAAATCCTCCTCCCATGTTGATGTCTGAGGTTTCGTCATACTCGTCCGGCATTGATGTTGCAGTAGAATCAAACCTATCTTACAATGTAATGGAAATGACAGAATTGGGATCCACATGGGAGGAGTGGAATTGCTTAGACACAAACACTCAAGAATTTGAACAGGACAATGATTTTGGTGGTTCGGAATTGTGGACAGAAGAAAACATATGGTTCTTGCAGCAACAACTTGCTGGCGATTTATGA 810 0.4272 MVTRSLSDCGSLATNVSEEDIMVIKKGPWIEEEDTVLMNYVAVHGEGHWNSVARCSGLKRTGKSCRFRWLNYLRPNVRRGNITLQEQLLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQARQLNCDVNSKLFRDTLRFEWIPRLIERIQSTRATADTNLYIQRQTSNCNNTKAHSDTCTNANPPPMLMSEVSSYSSGIDVAVESNLSYNVMEMTELGSTWEEWNCLDTNTQEFEQDNDFGGSELWTEENIWFLQQQLAGDL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05386 269 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Vivi1g05386 269 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Vivi1g05386 269 CDD SANT 83 122 IPR001005 -
Vivi1g05386 269 FunFam Myb transcription factor 26 78 - -
Vivi1g05386 269 CDD SANT 28 73 IPR001005 -
Vivi1g05386 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Vivi1g05386 269 FunFam MYB transcription factor 83 146 - -
Vivi1g05386 269 Gene3D - 83 124 - -
Vivi1g05386 269 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 201 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vivi1g05386 269 SMART sant 25 75 IPR001005 -
Vivi1g05386 269 SMART sant 78 126 IPR001005 -
Vivi1g05386 269 SUPERFAMILY Homeodomain-like 24 120 IPR009057 -
Vivi1g05386 269 Gene3D - 25 78 - -
Vivi1g05386 269 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Vivi1g05386 269 ProSiteProfiles Myb-like domain profile. 25 73 IPR001005 -
Vivi1g05386 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05386 Vivi-Chr1 117905395 117906934 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05386 24 268 MYB Transcription Factor Family AT2G47190 47.015 2.17e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1g05386 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05386 K09422 - gmx:100777932 309.686