Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05384 ATGGTTCCAAAAACTCATCTCCAATGCATTCTATTTCTTCTTTCATTGTTATACACCACTTGCAGATTAGAAATGGAGTCTGATTTTGACAAGTGGATATCATGGAACCTGAAGAGTCACCAAGGAAAGACCATTCTGGAAAACAAGAGGAGTGGTCTTGATTTGAAGCTACAACAAGCAGAGAGTAACAAAACTATCCTAACTGTTAGCAAAGATGGTGGTGCTGATTTCAACACTATTAATGAGGCTATTAGTAGCATTTCACCACACAATACTAGAAGAGTTGTTGTGTCCATTGCACCTGGTGTTTATAGGGAGAAGGTTGTCATCCCCGAAACATTGCCATTCATAACATTTTTAGGGGATGCAAACAATCGACCGACTATTAGTGGAAATGATACATCATCTGTTACCAGAAGTGATGGGAGTATATTAAAGACGTTTAATAGTGCAACTGTTGCTGTGAATGCGAGCTATTTTATAGCGATCAATATTATATTTGAGAATAATGCTTCATATTTTGAATCAAAAATAGAACAAGCGGTTGCGCTTCGCATTTCTGGAAATAAATCAGCATTTTACAATTGTTCATTTTATGGAGTTCAAGATACTTTATATGATCACAAAGGCCTTCACTATTTCAAAAATTGTTTTATTCAAGGTTCGACTGATTTCATATTCGGCTATGGGAGAACTCTTTACGAGAATTGTACTTTAAACTCCGTAACCAAGAACGTGACCTCTATCACAGCTCAAAAGCGTTCAAATTCGTCTCTTGATAGTGGATTTTCCTTCAAAAATTGCAATGTAACAGGTAGTGGACATGTTTATCTTGGAAGGCCATGGGGAGATTATTCAAGAGTTGTATACTCTTACACCTTCATGGACAAGATTGTTCTCCCAAAAGGATGGGAAGATAGTTGGGGTGACCAAAAACGCAACTTGACGGTATATTATGGAGAGTACAAGTGTAGTGGGCCTGGATCAAACTTGTCTAAAAGAGTTTCATGGACACGGATACTAACAGATGAAGAGGCCCAACCTTTTATTGGAATCCATTTTATTCAAGGGGATACTTGGCTCATTAGCCCTTAA 1095 0.3772 MVPKTHLQCILFLLSLLYTTCRLEMESDFDKWISWNLKSHQGKTILENKRSGLDLKLQQAESNKTILTVSKDGGADFNTINEAISSISPHNTRRVVVSIAPGVYREKVVIPETLPFITFLGDANNRPTISGNDTSSVTRSDGSILKTFNSATVAVNASYFIAINIIFENNASYFESKIEQAVALRISGNKSAFYNCSFYGVQDTLYDHKGLHYFKNCFIQGSTDFIFGYGRTLYENCTLNSVTKNVTSITAQKRSNSSLDSGFSFKNCNVTGSGHVYLGRPWGDYSRVVYSYTFMDKIVLPKGWEDSWGDQKRNLTVYYGEYKCSGPGSNLSKRVSWTRILTDEEAQPFIGIHFIQGDTWLISP 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05384 364 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 56 361 - -
Vivi1g05384 364 Coils Coil 43 63 - -
Vivi1g05384 364 Gene3D - 60 363 IPR012334 -
Vivi1g05384 364 ProSitePatterns Pectinesterase signature 2. 219 228 IPR033131 -
Vivi1g05384 364 SUPERFAMILY Pectin lyase-like 64 361 IPR011050 -
Vivi1g05384 364 Pfam Pectinesterase 68 358 IPR000070 GO:0030599|GO:0042545
Vivi1g05384 364 FunFam Pectinesterase 62 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05384 Vivi-Chr1 117870058 117871854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05384 62 361 Carbohydrate Esterase AT5G47500 44.040 2.31e-90 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05384 K01051 - qsu:112011696 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05384 1 117870058 117871854 Vivi1g05384 1 117870058 117871854 ECH