Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05374 ATGGTTTCCAAACCTAACGATTCTCCTCTAATTCTCCATCAAAAATTAGGTGAAGAGCCGCCCAATGATGATGCTGTTGGAGCCTTGTCCGCCAAGATAAATCAGTTGAAAAAGCAAATCCAGGCAGAGAGAATTGATTTCATTGCTGAAAAACTTCAGACGAACCAGAAGAAGCTACAATGCCATATTTCAGGAATAATGTCGGCAGTATCAACCAGGGACTCTTCACAGACGGAAGAAAACAAGACATGTTCAATTCTTTCTTCAAGAATGGACCATCCTTTATGTAAATTTGACAGCTTTAACCATGTTTCTGGAGACAAAGACCACAGCAATCAAGACATGTCACCTGCAACAAGCATCAAGATTCCACGTATTGAAAGATTGCCACCATATACATCTTGGATATTTTTGGATAGGAATCAGAGAATGGCTGAAGATCAGTCAGTCGTTGGAAGAAGACGGATCTACTATGATCAACGTGGAAGTGAAGCATTGATATGTAGTGACAGTGAGGAAGAACTAACGGAACCTGAGGAAGTAAAACATGAATTTTGTGAGGCCGAAGACCGTATTTTATGGATGGCATTTGAGGAACATGGGTTAAATGAGGAGGTATTGAATGTTGTTTGCAAGCATGTTGGGGGCACCAGTTTAGAAATCCAGGAGAGGTACAAAAGTATCAGGGAAAATACTACTGGTAGGTTGGACCAGCATTCAAAAAGCTTAGGAGAACATGACTCTCCTATGAGCATGTATCTAGAGAAAACCCTGAGTGATGCACTAGATTCTCTTGATAACCTTTTTTGTCGCCGGTGCCTGATTTTCGACTGTCGACTGCATGGCTGTTCTCAACCTTTGATATGTCCGAGTGAAAAGCAAACAGTTTGGTCTGAGCCTGAAGGTAACAGGAAACCATGCGGTGATCAATGTTACCTCCAGCAGTTAAATGTTGTCAAAAAATTGCCAAAAGATACAACTTCTGGATCTTTTCGGGATAAGAAAATTACAATTGTAGAGGAGACAAATGGGATAATGTCACCACCGCCCGCTGCTGAAGAACCTGGCAATCAGAGTACTAAACTTCCGACAAGACCCGATTGCCATGGATATCTTAATTTAAATGACCATGTTTCAGAAAATATAGGGAAACGAAAAGTCACAAATCAGTCAGATTCAAGATTGCCTCCTGATTCTCAGAACTCTAGTAAAAAGCTAAAAAGTATCTCAGATGATGTAGTTACTGTAATTAGTGATAATAGCAAGGACCTAAACTTGGGTGCATGTGATGAAAACAAACATATAAATACTTGTGCAGTTTTGGACAAATCTGTTGAACACTCTTCGAATAAACTAAAAGTTCCTTCTAGCACTTGCCACAGTGAGAATGACAAAGGTGTTGTCAATGGATCCAAAGATGTCACAAATGAGACAGAACTTAAAAGGCCGGTGAATTCAATGGAAGGACAGGTTGATGAAATGCTAGGCTTCTCAGATTGGAAACCTCTTGAGAAAGAGTTATACCTGAAGGGAATAGAAATGTTTGGCAGGAACAGTTGCCTCATAGCTAGGAACTTACTTTCTGGTTTGAAGACTTGCATGGAAATATCTAGTTACATGCATGATCGAGGAGTGTCAATGCCCCACAGATCCATTGCTGCAGCTAGTTCAATCATGGATGACGAGGGAAATTTTGATGCAGAGTGCACAGACCAAGACATGCCATCTAGGTCACGGTTGCTGAGAAAAAGAGGCAAAACAAGGAAGTTTAAATATTCTTGGAAGTCTGCTGGTCACCCAACAACATGGAAAAGAATTGCTGATGGGAAAAACCAATCTTGCAAGCAGTATACGCCTTGTGAATGTCAATCAATGTGTGGAAAGGATTGCTCTTGTGTTAATGGTGGGACATGCTGTGAAAAATACTGTGGTTGTTCGAAGAGCTGCAAAAATCGGTTCAGAGGATGCCATTGTGCCAAGAGTCAATGCAGAAGTCGACAATGTCCATGCTTTGCTGCTGGACGTGAATGTGATCCAGACGTCTGTCGAAACTGTTGGGTTAGCTGTGGGGATGGCACATTGGGGGAGCCACCACGGCGTGGAGAAGGTCAATGCGGAAATATGAGACTTCTTTTAAGGCAACAACAGAGGATTCTCTTGGGGAAGTCGGATGTTGCAGGATGGGGAGCCTTCTTGAAGAATCCTGTTAACAAAAATGATTACCTAGGAGAGTACACTGGTGAATTGATCTCGCACAGAGAAGCTGATAAGCGTGGAAAAATATATGATCGTGCAAATTCATCTTTCCTTTTCGATTTGAATGAGCAGTTTGTTCTTGATGCTTATCGGAAAGGAGACAAATTGAAATTTGCAAACCACTCATCAAACCCCAACTGCCATGCAAAGGTGATTTTGGTTGCTGGAGATCATCGTGTTGGCATATTCGCCAAGGAACACATTGATGCCAGTGAGGAGCTCTTCTATGATTATCGCTATGGACCAGATCAAGCACCTCCATGGGCTCGTAAACCTGAGGGTTCCAAGAGAGACGAATCAGAAGGTAGGGCGAAGAAACATCAATCTCATTGA 2589 0.4199 MVSKPNDSPLILHQKLGEEPPNDDAVGALSAKINQLKKQIQAERIDFIAEKLQTNQKKLQCHISGIMSAVSTRDSSQTEENKTCSILSSRMDHPLCKFDSFNHVSGDKDHSNQDMSPATSIKIPRIERLPPYTSWIFLDRNQRMAEDQSVVGRRRIYYDQRGSEALICSDSEEELTEPEEVKHEFCEAEDRILWMAFEEHGLNEEVLNVVCKHVGGTSLEIQERYKSIRENTTGRLDQHSKSLGEHDSPMSMYLEKTLSDALDSLDNLFCRRCLIFDCRLHGCSQPLICPSEKQTVWSEPEGNRKPCGDQCYLQQLNVVKKLPKDTTSGSFRDKKITIVEETNGIMSPPPAAEEPGNQSTKLPTRPDCHGYLNLNDHVSENIGKRKVTNQSDSRLPPDSQNSSKKLKSISDDVVTVISDNSKDLNLGACDENKHINTCAVLDKSVEHSSNKLKVPSSTCHSENDKGVVNGSKDVTNETELKRPVNSMEGQVDEMLGFSDWKPLEKELYLKGIEMFGRNSCLIARNLLSGLKTCMEISSYMHDRGVSMPHRSIAAASSIMDDEGNFDAECTDQDMPSRSRLLRKRGKTRKFKYSWKSAGHPTTWKRIADGKNQSCKQYTPCECQSMCGKDCSCVNGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGTLGEPPRRGEGQCGNMRLLLRQQQRILLGKSDVAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNEQFVLDAYRKGDKLKFANHSSNPNCHAKVILVAGDHRVGIFAKEHIDASEELFYDYRYGPDQAPPWARKPEGSKRDESEGRAKKHQSH 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05374 862 SMART CXC_2 651 688 IPR033467 -
Vivi1g05374 862 ProSiteProfiles SET domain profile. 716 831 IPR001214 GO:0005515
Vivi1g05374 862 CDD SET_EZH 716 832 - -
Vivi1g05374 862 Pfam SET domain 727 830 IPR001214 GO:0005515
Vivi1g05374 862 ProSiteProfiles CXC domain profile. 603 702 IPR026489 -
Vivi1g05374 862 MobiDBLite consensus disorder prediction 379 407 - -
Vivi1g05374 862 SUPERFAMILY SET domain 589 835 IPR046341 -
Vivi1g05374 862 MobiDBLite consensus disorder prediction 452 471 - -
Vivi1g05374 862 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g05374 862 Pfam CXC domain 655 686 IPR041355 -
Vivi1g05374 862 MobiDBLite consensus disorder prediction 384 407 - -
Vivi1g05374 862 MobiDBLite consensus disorder prediction 836 862 - -
Vivi1g05374 862 FunFam Putative histone-lysine N-methyltransferase EZH2 617 833 - -
Vivi1g05374 862 SMART set_7 716 837 IPR001214 GO:0005515
Vivi1g05374 862 Gene3D SET domain 617 833 IPR046341 -
Vivi1g05374 862 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 27 861 IPR045318 GO:0006338|GO:0042054
Vivi1g05374 862 MobiDBLite consensus disorder prediction 842 862 - -
Vivi1g05374 862 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 862 IPR025778 GO:0031519
Vivi1g05374 862 Coils Coil 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05374 Vivi-Chr1 117587336 117595977 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05374 705 834 C2H2 Transcription Factor Family AT2G23740 24.490 1.34e-08 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi1g05374 SET 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05374 - - gmx:100808730 1354.35