Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05365 ATGGCATTACTTCGACCTTCATCTTTCATAATCTTATTGGCATATGGTGCATTAATAGTTCTTGCCGCATTGACGCCATGTTGGTATGTGATGGTCACACATATCCAAAAACGCGCGAATTCGCATTCAAACAATATTGTGTCAAATCTGCAATCTGAAATTGAGTACTCAGCCGAATTGTTGCAACCATTCAAGTCATCATCAACAAATTTAGCTAGATTATTGAGTTCAACTGTTAATTCTACTAATATCACTTTCTCTGATATTAAGACTAAGGTGGCTCCATTATTATTTCAAGCATTGAAGACAATTCCTCACTTAACACAAATTTCATACATAGGAACTCAAGGTCTTTCTTTCACATACTATAATGATGATGATCAAGTTCTAGCAATGTACTCTAATTCTTCTATAGTTGATGCATCAAATAAAACCATATACTATATTCAACCAGTAAATCGTGACACCGGAGAGATTTTCGGGGAAGCCTTAATATCGAACAAGACTATCAATATCAAGTTGAGTTTGATACCCGGTACAAACGATACTCGACACAAATGTGCATCGTTAGGAACGAAGTTGAACAATGTTAGTGAACTTTTGTTCATCAATTCGGCTAGAATCAATAAAATAGGCGTGATATCTCTTGGATTTTCGGGGAAAACAATAACGGATTATGTTACTCAGGTTGTCGATCGTCAAGGGACGATATCGTATTTGGCTACCAAAGATGGAAATGTGATTGCAAAAGGAAATCAAAATATTGGTTTGAAGATTTTGAATGATAGTGTTTTATTACAATCTTTGAATGCTAATGGGGATATAATAAGAAATGAAGGAGGTGTATCTTGCAAGGATCAAGTTTATGATTCTAGTTTGAATATTCAAGATACTCAATATTTTGTTCAATGCTATCCTATTGATATTATCGGAGTAGAATCGGTGTATGTGATGGTTGTTCCGAAAAATGAAATTTCCGACTTCGATCCAAGGTATAAAAAAAAAGGATTGATACTCTTGATTGTTATGATGGTGCTGATATTTATAGCTATCTCGAGTTTCTTATTCGTGAACATTGGAGTAACAAGAAGAGAAATGAATTTATGTGCATCACTCATAAAACAAATGGAAGCAACGGAACAGGCCGAGAGAAAGAATATGAACAAGAGTCTTGCTTTCGCGAGTGCTAGCCATGATCTTCGCGCTTATCTTGCAGGGCTTATCGGTTTGATTGAAATGTCTTCTAAATTAGTTCTCTCTAATACAGGCACCGATTTGAATTTGAAACCGCGTTCTGAATTGGAAACGAATTTCAAACAAATGGATAATTGCGCGCAAGACTTGCTAGGACTATTGAATTCTATACTCGACACGAGCAAAATTGAAGCAGGAAAAATGCAACTAGAGGAAGAGGAATTTGATTTATCGTATCTTGTTGAAGATGTGGTTGATTTGTATTATCCGATGGCGATGAAGAAAGGCGTAGAACTTGTGTTGGACTCTTGTAATGGTTCGGTTATAAGGTATTCGCGCGTGAAAGGCGATAGGAGAAAATTGAAGCAGGTTTTGTGTAACTTGCTTAGCAATGCTGTTAAGTTTACCGATGAAGGACACATAACGGTTAGAGCGTGGGCGCAGAAATCGACGTTGCAGAAGTCGATAATCAAGAGAAACCAAAATAGTGTTATGAAGCCTTTGTCTTGGATGTTTTTTAAGAAAAACGATAAAGATGTTGATGATATAGAAGCGGTGAGTTCGATTCAACAAGACACTTGTTTGATGGATTTCGTATTTGAAGTGGATGATACGGGGAAAGGAATTCCGAAAGAGAAATATAAGTCGGTGTTCGAGAATTATGTTCAAGTTAAAGAGAATACTGTTGGCCAAGTTGGGACTGGCTTAGGACTTGGAATTGTGCAGTCACTGGTACGTTTGATGCATGGAGACATTGAAATTGTGGAGAAAGAAGTAGGCAAAAAAGGAACATGCTTCAAGTTCAATGTGCTTCTCTCGTTATGTGAAAACGACGCGGTAACTTATGGTTTAAGGGAAGGTTTTGAATATGGATCGACCTCGGGCAACAGAAACCAAATTTGCCCCTCTTCCAGTCCTAAGACCGAGCCTTCGCATGTTATTCTTTACCTTGCTGATGAAGAAAGAAGAAGAACTTCGCAGATGTTCATTGAGAGTTTAGGGATCAAAGTTAAAGTTGTGAAGAATAGGAAACATCTCATTGATACTCTCAAGAAGATAAAGAAACAAAATGGTCATCAAATTAGTGATCAAAGTTCTTCAGAGTCTTCGGAATTAGGTTCTCGGTGTCCGTCTTATAACTCTTCTTATAGTAGAGGTTCGACGAAAATTCCTTTGAGAGCTTTGGATGGAGCGGAATACGTATCTTCAATGTTCAAGATGACGAATAATGGAGCTGCAACGAGTTTTGTTTTGATTATCATCGACGCAAATGCGGGACCGTTTTCTAAACTTTCTACTATTGTGACAAACTTTAAAAAAGATCTTGTCAATCCTAGTAAAGTTATTTGGTTGGAAAAGCCTTTTGAAAGTAGCATCGATTTCAAAACGATTGATCGAGATGATGTTGTGATATCTAAACCGTTTCATGGAACTAGATTGTTTCAAGTTATAAAGTTTCTTCCCGAGTTTGGTGGGAATTTGAAAAGCAATTCTAGTAATAAAGCTTTACGAGAATTAAGATCACAAGTATCTTCTCACGACGAAAGCGTGTATCTAAACACGAAATCTTGTAGGGAGACGAAAAGTTATATTGATCAAAATGATTCTAAACCTTTAAGTGGGAAGAAATTTTTGGTTATTGATGATTCTCCAATGTTGAGAAAGATTGCTATGGCTACTTTGAGTTCTCTTGGTGTTACTAGTATTGATCAATGTGAGAATGGTAAAGAGGCTTTGAAACAAGTTGAACAAGGTTTAAAAAATGATTTTCCTAATCCTCCTTATGATTACATCTTAATGGATTGTCAGATGCCAGAGATGGATGGATTTGAGGCAACAAGGAAGATAAGAGAAATGGAGAAAGAATATGGTGTGCACATTTCAATCATTGCATTATCTGCTGAAATTGATAAATTGACAACAGAGACTGGAATGGATTTTCACATAACCAAGCCTATTAAGAAGGAGCATTTACTCAAAGCTATTACATACATAGAAAATAGTGAGATATAA 3207 0.3648 MALLRPSSFIILLAYGALIVLAALTPCWYVMVTHIQKRANSHSNNIVSNLQSEIEYSAELLQPFKSSSTNLARLLSSTVNSTNITFSDIKTKVAPLLFQALKTIPHLTQISYIGTQGLSFTYYNDDDQVLAMYSNSSIVDASNKTIYYIQPVNRDTGEIFGEALISNKTINIKLSLIPGTNDTRHKCASLGTKLNNVSELLFINSARINKIGVISLGFSGKTITDYVTQVVDRQGTISYLATKDGNVIAKGNQNIGLKILNDSVLLQSLNANGDIIRNEGGVSCKDQVYDSSLNIQDTQYFVQCYPIDIIGVESVYVMVVPKNEISDFDPRYKKKGLILLIVMMVLIFIAISSFLFVNIGVTRREMNLCASLIKQMEATEQAERKNMNKSLAFASASHDLRAYLAGLIGLIEMSSKLVLSNTGTDLNLKPRSELETNFKQMDNCAQDLLGLLNSILDTSKIEAGKMQLEEEEFDLSYLVEDVVDLYYPMAMKKGVELVLDSCNGSVIRYSRVKGDRRKLKQVLCNLLSNAVKFTDEGHITVRAWAQKSTLQKSIIKRNQNSVMKPLSWMFFKKNDKDVDDIEAVSSIQQDTCLMDFVFEVDDTGKGIPKEKYKSVFENYVQVKENTVGQVGTGLGLGIVQSLVRLMHGDIEIVEKEVGKKGTCFKFNVLLSLCENDAVTYGLREGFEYGSTSGNRNQICPSSSPKTEPSHVILYLADEERRRTSQMFIESLGIKVKVVKNRKHLIDTLKKIKKQNGHQISDQSSSESSELGSRCPSYNSSYSRGSTKIPLRALDGAEYVSSMFKMTNNGAATSFVLIIIDANAGPFSKLSTIVTNFKKDLVNPSKVIWLEKPFESSIDFKTIDRDDVVISKPFHGTRLFQVIKFLPEFGGNLKSNSSNKALRELRSQVSSHDESVYLNTKSCRETKSYIDQNDSKPLSGKKFLVIDDSPMLRKIAMATLSSLGVTSIDQCENGKEALKQVEQGLKNDFPNPPYDYILMDCQMPEMDGFEATRKIREMEKEYGVHISIIALSAEIDKLTTETGMDFHITKPIKKEHLLKAITYIENSEI 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05365 1068 SMART HKATPase_4 514 672 IPR003594 -
Vivi1g05365 1068 Pfam Response regulator receiver domain 943 1060 IPR001789 GO:0000160
Vivi1g05365 1068 SMART HisKA_10 388 464 IPR003661 GO:0000155|GO:0007165
Vivi1g05365 1068 Gene3D - 918 1066 - -
Vivi1g05365 1068 CDD HisKA 386 460 IPR003661 GO:0000155|GO:0007165
Vivi1g05365 1068 PANTHER TWO-COMPONENT HISTIDINE KINASE 41 1061 - -
Vivi1g05365 1068 Gene3D - 466 677 IPR036890 -
Vivi1g05365 1068 PRINTS Bacterial sensor protein C-terminal signature 630 648 IPR004358 GO:0016310|GO:0016772
Vivi1g05365 1068 PRINTS Bacterial sensor protein C-terminal signature 596 610 IPR004358 GO:0016310|GO:0016772
Vivi1g05365 1068 PRINTS Bacterial sensor protein C-terminal signature 614 624 IPR004358 GO:0016310|GO:0016772
Vivi1g05365 1068 SMART REC_2 940 1060 IPR001789 GO:0000160
Vivi1g05365 1068 ProSiteProfiles Response regulatory domain profile. 941 1064 IPR001789 GO:0000160
Vivi1g05365 1068 MobiDBLite consensus disorder prediction 755 784 - -
Vivi1g05365 1068 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 376 466 IPR036097 GO:0000155|GO:0007165
Vivi1g05365 1068 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 453 667 IPR036890 -
Vivi1g05365 1068 ProSiteProfiles Histidine kinase domain profile. 395 672 IPR005467 -
Vivi1g05365 1068 Gene3D - 371 465 - -
Vivi1g05365 1068 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 514 670 IPR003594 -
Vivi1g05365 1068 MobiDBLite consensus disorder prediction 757 784 - -
Vivi1g05365 1068 SUPERFAMILY CheY-like 938 1063 IPR011006 -
Vivi1g05365 1068 CDD REC_hyHK_CKI1_RcsC-like 942 1060 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05365 Vivi-Chr1 117445255 117449252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05365 5 1065 Histidine Kinase Gene Family AT2G47430 38.000 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi1g05365 HATPase_c 4.5e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05365 - - vvo:131629190 1971.82