Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05364 ATGGAAGGAGAAGTTGTTTTGTTCATTGATGATTTGAAATCAATTTCTGGATTTTCTCGATGTAGAATATGTCATGAAGAAGAATTTGAAAGCTTCAAAAGCTTAGAAGCTCCTTGTGCTTGTTCTGGAACAGTTAAGTTTGCTCATAGAGATTGCATTCAGACATGGTGCAATGAGAAAGGAAACACAACTTGTGAAATTTGTTTACAACAATATGAACCTGGATATACAGCACCACCACCAGAGAAATGTAAAAAGTCTAATGAAGTAATGACCATTAGATATAGCCTTGAAATATCAAGGAGAGAAGAAGAAGAATTAAACAGAAGAATAGTTGAATATGAAGACGGTGTGAGAAGAGAAAACAGTTACGTTGAATGCACCTATGCTGCAGATAGAAGCGCGTTTTGTTGTCGATCACTGGCTTTAGCTTTTACTCTCATATTACTTCTAAGACATCTTTTTGCTTTGCTTACAAGTGGGATGGAAGATTACCCATTTACAATTCTTACAATTTTCATACTAAGGGCCAGTGGAATTATTATACCTATGTTCATAATAATTAGGACTATGGGTGCCATTCATAAAAGTATCCAGCGTCATTATCACCAGGATTCTGATGATGACTCATCAATGTCTGATGCAGATGATGAACAAAATGGAACACCACATATTGCAATTTTAAGACATTCACATTATTAA 702 0.3504 MEGEVVLFIDDLKSISGFSRCRICHEEEFESFKSLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTAPPPEKCKKSNEVMTIRYSLEISRREEEELNRRIVEYEDGVRRENSYVECTYAADRSAFCCRSLALAFTLILLLRHLFALLTSGMEDYPFTILTIFILRASGIIIPMFIIIRTMGAIHKSIQRHYHQDSDDDSSMSDADDEQNGTPHIAILRHSHY 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05364 233 Coils Coil 97 117 - -
Vivi1g05364 233 Pfam Protein of unknown function (DUF3675) 74 191 IPR022143 -
Vivi1g05364 233 FunFam E3 ubiquitin-protein ligase MARCH4 10 78 - -
Vivi1g05364 233 Pfam RING-variant domain 21 68 IPR011016 GO:0008270
Vivi1g05364 233 SUPERFAMILY RING/U-box 19 73 - -
Vivi1g05364 233 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 19 201 IPR033275 -
Vivi1g05364 233 SMART ringv_2 20 69 IPR011016 GO:0008270
Vivi1g05364 233 CDD RING_CH-C4HC3_MARCH 21 68 - -
Vivi1g05364 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 78 IPR013083 -
Vivi1g05364 233 ProSiteProfiles Zinc finger RING-CH-type profile. 13 75 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05364 Vivi-Chr1 117420140 117422047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05364 21 68 C3H Transcription Factor Family AT2G37950 44.898 3.59e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05364 - - gmx:100797029 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05364 1 117420140 117422047 Vivi1g05364 1 117420140 117422047 ECH
Vivi6g04610 6 148187212 148189261 Vivi1g05364 1 117420140 117422047 PCT