Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05358 ATGCTCGAAAACAGTCACTCACCGCGAGTCTTTCGCGGTGTTCATTTCTCCCTCTTTGGTTTCGACCCTCTCACTGAAAGCAAGATACGGTTCAAACTTGTGAATGGCGGTGGAATTGATGCGGGAAGGAACAGTGGGAATTGTACTCATGTTATTGTTGATAACCTTGTTTATGATGATCCCGTGTGTGCTGCTGCAAGAGATAATGGAAAGACGCTGGTTACATCGTTGTGGGTTGAGCACAGTGCCGATATTGGAATGCCCGTTGATGTTACCTCGGTTATGTACAGACCGCTTAAAGACTTGAATGGAATTCCTGGTGCAAAAGATTTGTTTGTCTGCTTGACTGGTTATCTACGCCAGGATCGGGAAGACATCATGACTATGGTTGGCTTGATGGGTGCACGGTTTTCTAAGCCGTTGGTGGCAAACAAGGTTACTCATCTTGTATGCTACAAATTTGAAGGGGAAAAGTATGAGCTTGCAAAGAGAATGGGCACAATAAAGCTAGTTAATCATCGTTGGCTGGAAGATTGCTTGAAGGATTGGGTGCTTCTTCCTGAAGACAAATATAACAAGAGTGGTTTTGAATTGGAGATAGTGGTGGAAGAGGCTAAGGATTCTGAGGATGAGGCTGAAGATTCCAAGCTGGGGCAATTAGGGGGAAGGAATACAAGCAAAAGCCCCCCTGGTTCAAAATTTGGTACAACTGTGACTCCTGGATTGTCCAAAACTTTAAGAGAGGAGGCATCAAATGCTATCCCAGATTCTACTGGTCCACAGGTCTTACCAAACGTCAATATTGGTGAAGATCCTTTAACTACTACAAGAAATAAGAATAATTCTGATCAAGATGCAGACTTGAATAATATTGGTGACCTTAAGGCACATGGCTTCCAGGATCTAGGCATCACTGGAAACACAAGTTCATCTGCCCAGCAACCTAATCTGCAAGGTGGCACTTTGGAGACCAAGAAATTAAGTCACACAAGATCAACTTCTACAAATGCTGATGGACTTGCACATTCAGATGAAAAGCTTGGATCTGCGAGTTATTCTAGGAAGAATCAAAAGGGGTTTACCTTTTCAAAGGTATCAGAAGAATATGAAGGTATAGAAGGCAACAACCTTGAAACCCCTTCCACCAAGGTAGAAAAGACACGTGATAGAATCAAGTCTGCTTGTGTTGAAGGTTCTGGGAAAGAATCTTCTGTTATTCAAGAGGTTAATGGAAATAATTTATTGCCTCAAAAGAGAACAAATGAAGCTGCTGCTTCTTCCAAATTAAAATCAAGAAAGGTTGCTGGTAATGCAAAATTGTCTATTGAAAGGACACCGCTAAAAAATGGTAAATCTCGAGGATTAAAAGTCCCTTCTGTGGTTGATGAACCGCCTACGTCTGATGGCTTTCTCTCTGTTGACAAAGATGGTACAAATAACTCAAACACTTGCTTGATTGCTAAATCTGCAGCTTCTGCCTCCAACTCAGTGGCAATTAATAAGCCTATCTCAGGAAATGCAGAGCCGGCTCAATGTAATAATGCATGTCTGAATTCAGCCCAAAAGGCTGTTCAGAGCTTAAGTAAGTCTAAAACTGGTGAGCCTGATATAAAGGGTTTTGAAATGGGACAAGGTGATAACAAAGCAGAGGAACATAATATCACTACAAATCTTGTTTTTTCATCACCAGGAAAGAAGTCAAAGAATGAAGGGTTTGCTAGTCTTGATGATTGGGATTTAAGCAATGAAGAAAGCGATAAGCTGGTTAGAAAGTCACCCCACAAGAAATCATCTGTCAAGAGAACTCTCGGTTCTAGACCCAGAAAAGGTGTTACTGCTAAACTGAAGAGTTCAGTTTGCTTGAATAAAACTATGCAGCAAGATGAAGGCGTAAGTTCTAGCAGTGGAAGCAAAGAAATAGAAACTTCTGGTGCTGGTCAAGCATCACCCCCAGTCCTTGATGTAAACAAATTGACGGAGCAAAAAGCGGTTAGTGAATATGCAGAAGATGCTGGTGGCAGAACTGATATTTTGGATGACGAAACAGAGGCTCCAGATGACAAATGTGAATCTGAGATGGGAATGGCTCCTGATGAAGAATTGGTTCATCTTTCAAAAAAACATGACACCTCAACAGAAGAGAAGTTAGAAGCAGTTGAACCTGAAAAAAAAAGTGAAGAAGCAATGCCTCCTAAAAAATTCACAAATGAAACTGAAAAACAGAAACCACCTTCACTGTTAGACCCTTCCTCAAAGTTAAAAGTAAAGCATCAAGCGATGAAGCGTCCTGCTAGTAAAACCAAGAAGCCCACAGCTGCAAAGAAAATAGCGAAAACTGTAGAGCCAGTATCTGGGGAGATGATTCCTAATGAGACAAGGGATGGGGCAGAGATAAAAATCCTGCCTCATCTTGAAGAGAAGTTTGAAGCAGCTGAACCTGATAAAAAATGTGAAGAAGCCGCGTCTCCTAAAAAATTCACAAATGAAACTGAAAAACAAAAATCACCTTCACTGTTAGACTCAACCTCCAAGTTAAAAGTAAAGCATCAAGCAATAAAGCGTCCTACTAGTAAAACCAAGAAGCTCACAGCTGCAAAGAAAATAGCGGACACTGTTGAGGTAGCATCTACAGAGATGATTCCTAATGAAATAAGGGATGAGGCAGAGATGAAAATCCTGAAAGAAATGTCTGTATCTTCTGATATAAAACGCCCTCCTAGTAAAACCAAAAAGCCCACAGCTGCAAAGAAAATAGCGGAAACTGTTGAGGTAGCATCTGCGGAGATGATTCCTAATGAGACAAGGGATGAGGCAGAGATGAAAATCCTGAAAGAAATGTCTGTACCTTCTGATATGAAACGCCCTGCTAGTAAAACCAAGAAGACCACAGCTGCCAAGAAAATAGCGAAATCTGTAAAGGCAGTATCTGGGGACATGATTCCTAATGAGACAAAGGATGAGGCAAAAATAAATATCATGAAAGAAATGTCTGTACCTTCTGATATAAGTGAGAACTCAAATGCACCAAGAAATAAACCAGAGAATTTTGTTGAAGAGGAGAAGGAGAATAGACCAAATGTCGGAGAACATGATTTACTGAAGGAAAGAAGTGTTGTAAAGCGAACTATTAAATCTAGTGTTAAGCCGACGAGTATAAAGTCTAAGAAAATGAAGCACAGTCCATCTATATCAGAATTTAATGCAAGAGTAAAAACTGAAGACTCACGTTTCATATTATGTGGCCATCGCCTACAAAGAAAGGAATTTCAGCAAGTAATCAAGCGTTTGAAAGGAAGGCTTTGCCGTGATTCTCATCAGTGGTCATATCAGGCAACGCACTTCATTGCCCCAGAACCTATAAGGAGGACAGAGAAATTTTTTGCTGCTACTGCATCAGGAAGGTGGGTTCTTAAAACGGATTTCTTAACTGCCAGTAGCCAGGCAGGAAAATTCATGCCAGAGGAGCCTTATGAGTGGCACAACAATGGACTCACTGGTGATGGTGCCATCAATATGGAGGCTCCAAGAAAGTGGCGGCTGGTGAAAGAAAGAACAGGACATGGTGCCTTCTATGGGATGCGCATAGTTGTTTATGGCGCTTGTTTTGTTCCACCTTTGGATACTCTGAAGCGTGCAGTCAAAGCTGGAGATGGAACAATATTGGCAACATCTCCTCCTTATACTCGCTTCCTTGATAGTGGGGTCGACTATGCCATTGTTAGCCCTGGCATTCCACAGGTTGATTTGTGGGTCCAAGAGTTCTTAAAACATGAAATACCTTGTGTTGTAGCAGACTACTTGGTTGAGTATGTCTGCAAGCCTGGATCCCCCCTTGAGAGACATGTACGGTATGACACTGAAGCCTGGGCGGATAGGTCACTTGCAAAACTTCATAATAAGGCAGAAGAGATAATTGAAGAGGTCATTCCTCCTAAGGATTGCAATGATGATGATGATGATGATGTAGCTTGCCAAGTATGTGGCTCCAGGGAAAGAGGAGATGTCATGCTGATTTGTGGTGATGAAAGTGGATCTGTTGGATGTGGAATGGGTACCCATATTGATTGCTGCAATCCTCCGCTCACAGCTGTTCCTGAGGAAGATTGGTTTTGCCCAGAATGCAGTAGTACCCAAAAATACTCAAAAAACCCCAAGAAAAAGAAAAAGGGTGCATTGTCTTCATCAAAGACCAAGTGA 4197 0.4174 MLENSHSPRVFRGVHFSLFGFDPLTESKIRFKLVNGGGIDAGRNSGNCTHVIVDNLVYDDPVCAAARDNGKTLVTSLWVEHSADIGMPVDVTSVMYRPLKDLNGIPGAKDLFVCLTGYLRQDREDIMTMVGLMGARFSKPLVANKVTHLVCYKFEGEKYELAKRMGTIKLVNHRWLEDCLKDWVLLPEDKYNKSGFELEIVVEEAKDSEDEAEDSKLGQLGGRNTSKSPPGSKFGTTVTPGLSKTLREEASNAIPDSTGPQVLPNVNIGEDPLTTTRNKNNSDQDADLNNIGDLKAHGFQDLGITGNTSSSAQQPNLQGGTLETKKLSHTRSTSTNADGLAHSDEKLGSASYSRKNQKGFTFSKVSEEYEGIEGNNLETPSTKVEKTRDRIKSACVEGSGKESSVIQEVNGNNLLPQKRTNEAAASSKLKSRKVAGNAKLSIERTPLKNGKSRGLKVPSVVDEPPTSDGFLSVDKDGTNNSNTCLIAKSAASASNSVAINKPISGNAEPAQCNNACLNSAQKAVQSLSKSKTGEPDIKGFEMGQGDNKAEEHNITTNLVFSSPGKKSKNEGFASLDDWDLSNEESDKLVRKSPHKKSSVKRTLGSRPRKGVTAKLKSSVCLNKTMQQDEGVSSSSGSKEIETSGAGQASPPVLDVNKLTEQKAVSEYAEDAGGRTDILDDETEAPDDKCESEMGMAPDEELVHLSKKHDTSTEEKLEAVEPEKKSEEAMPPKKFTNETEKQKPPSLLDPSSKLKVKHQAMKRPASKTKKPTAAKKIAKTVEPVSGEMIPNETRDGAEIKILPHLEEKFEAAEPDKKCEEAASPKKFTNETEKQKSPSLLDSTSKLKVKHQAIKRPTSKTKKLTAAKKIADTVEVASTEMIPNEIRDEAEMKILKEMSVSSDIKRPPSKTKKPTAAKKIAETVEVASAEMIPNETRDEAEMKILKEMSVPSDMKRPASKTKKTTAAKKIAKSVKAVSGDMIPNETKDEAKINIMKEMSVPSDISENSNAPRNKPENFVEEEKENRPNVGEHDLLKERSVVKRTIKSSVKPTSIKSKKMKHSPSISEFNARVKTEDSRFILCGHRLQRKEFQQVIKRLKGRLCRDSHQWSYQATHFIAPEPIRRTEKFFAATASGRWVLKTDFLTASSQAGKFMPEEPYEWHNNGLTGDGAINMEAPRKWRLVKERTGHGAFYGMRIVVYGACFVPPLDTLKRAVKAGDGTILATSPPYTRFLDSGVDYAIVSPGIPQVDLWVQEFLKHEIPCVVADYLVEYVCKPGSPLERHVRYDTEAWADRSLAKLHNKAEEIIEEVIPPKDCNDDDDDDVACQVCGSRERGDVMLICGDESGSVGCGMGTHIDCCNPPLTAVPEEDWFCPECSSTQKYSKNPKKKKKGALSSSKTK 1398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 302 340 - -
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 1375 1398 - -
Vivi1g05358 1398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1284 1390 IPR013083 -
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 1381 1398 - -
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 617 644 - -
Vivi1g05358 1398 Pfam PHD-finger 1324 1376 IPR019787 -
Vivi1g05358 1398 Gene3D BRCT domain 1186 1283 IPR036420 -
Vivi1g05358 1398 ProSiteProfiles Zinc finger PHD-type profile. 1321 1377 IPR019787 -
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 809 859 - -
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 999 1034 - -
Vivi1g05358 1398 SMART PHD_3 1323 1375 IPR001965 -
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 252 288 - -
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 584 796 - -
Vivi1g05358 1398 Gene3D BRCT domain 99 219 IPR036420 -
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 688 739 - -
Vivi1g05358 1398 SUPERFAMILY BRCT domain 9 93 IPR036420 -
Vivi1g05358 1398 Gene3D BRCT domain 1070 1185 IPR036420 -
Vivi1g05358 1398 SUPERFAMILY BRCT domain 109 191 IPR036420 -
Vivi1g05358 1398 Gene3D BRCT domain 2 95 IPR036420 -
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 205 240 - -
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 945 965 - -
Vivi1g05358 1398 SMART BRCT_7 106 183 IPR001357 -
Vivi1g05358 1398 SMART BRCT_7 8 86 IPR001357 -
Vivi1g05358 1398 SMART BRCT_7 1187 1274 IPR001357 -
Vivi1g05358 1398 SMART BRCT_7 1069 1149 IPR001357 -
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 896 916 - -
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 663 681 - -
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 528 549 - -
Vivi1g05358 1398 ProSiteProfiles BRCT domain profile. 1085 1159 IPR001357 -
Vivi1g05358 1398 CDD BRCT_TopBP1_rpt7 1076 1149 - -
Vivi1g05358 1398 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 791 1389 IPR044254 -
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 1013 1034 - -
Vivi1g05358 1398 Pfam BRCA1 C Terminus (BRCT) domain 1083 1144 IPR001357 -
Vivi1g05358 1398 Pfam twin BRCT domain 112 175 IPR001357 -
Vivi1g05358 1398 SUPERFAMILY FYVE/PHD zinc finger 1312 1383 IPR011011 -
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 756 773 - -
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 219 240 - -
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 252 350 - -
Vivi1g05358 1398 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Vivi1g05358 1398 MobiDBLite consensus disorder prediction 809 831 - -
Vivi1g05358 1398 SUPERFAMILY BRCT domain 1083 1163 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05358 Vivi-Chr1 117204009 117210898 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05358 129 244 Core DNA Replication Machinery Family AT4G02110 61.207 1.89e-36 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi1g05358 BRCT 9.6e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05358 K10728 - qsa:O6P43_007236 929.858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05358 1 117204009 117210898 Vivi1g05358 1 117204009 117210898 ECH