Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05340 ATGTCTACTGATTCTCATTCTCCTAATCTGTATCATAGAGGTGTTCTTTGCAATGCCGGTGCCGGTGCTGCCGCTGGTGTTATTGCGGCCACGTTTGTATGTCCTTTAGATGTAATCAAAACTAGGTTTCAGGTTGGGACTCCTCAGCTTGCTAATGGAAGAGTTAGAGGTAGTCTTATAGTTGGTAGTTTGGAGCAAATATATCATAAGGAGGGGTTGCGAGGGATGTACCGGGGGCTAGCCCCAACTGTTATGGCCTTACTTCCAAACTGGGCTGTCTATTTTACCGTGTACGAGCAGCTCAAGAAGCTACTTACTGATGATGAAAACCACCGCCTTTCAGTTGGAGCTAATGTGGTAGCTGCTTCGGGTGCTGGAGCTGCAACAACAATGGTTACAAATCCATTTTGGGTTGTCAAGACAAGACTCCAAACCCAGGGAATGAGATCCGGCGTTCTGCCGTATAGAAGTACCCTATCTGCTTTGAAGAAAATAGCTCACGAGGAGGGCATTCGTGGGATGTACAGTGGCCTTGTACCTGCACTGGCTGGTATCAGTCATGTTGCCATTCAGTTTCCAACATATGAGAAAATAAAATGTTATTTAGCAAATCGAGATAACACAACAGTGGATAAACTAGGCGCACGGGATGTTGCAATTGCCTCATCAGTTTCCAAATTTTTTGCATCTACAATGACATATCCTCATGAGGTTGTTCGATCTAGACTGCAAGAACAAGGACCTCACTCAGAGAAGCGGTACTCTGGTGTGAACGACTGCATTAGAAAGGTATTTAAACAAGAGGGACTCCCTGGTTTTTACCGTGGATGTGCCACCAACCTCCTAAGGACAACCCCAGCTGCTGTAATCACATTCACCAGTTTTGAAATGATACACCGTTTTCTAAGTTCACTTTCCCCTTCTGACCCGGAGCCGCATAATTTGTAA 948 0.4536 MSTDSHSPNLYHRGVLCNAGAGAAAGVIAATFVCPLDVIKTRFQVGTPQLANGRVRGSLIVGSLEQIYHKEGLRGMYRGLAPTVMALLPNWAVYFTVYEQLKKLLTDDENHRLSVGANVVAASGAGAATTMVTNPFWVVKTRLQTQGMRSGVLPYRSTLSALKKIAHEEGIRGMYSGLVPALAGISHVAIQFPTYEKIKCYLANRDNTTVDKLGARDVAIASSVSKFFASTMTYPHEVVRSRLQEQGPHSEKRYSGVNDCIRKVFKQEGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLSSLSPSDPEPHNL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05340 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 201 IPR018108 -
Vivi1g05340 315 SUPERFAMILY Mitochondrial carrier 16 297 IPR023395 -
Vivi1g05340 315 FunFam NAD+ transporter 111 306 - -
Vivi1g05340 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 104 IPR018108 -
Vivi1g05340 315 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 1 110 - -
Vivi1g05340 315 Pfam Mitochondrial carrier protein 14 108 IPR018108 -
Vivi1g05340 315 Pfam Mitochondrial carrier protein 113 204 IPR018108 -
Vivi1g05340 315 Pfam Mitochondrial carrier protein 219 303 IPR018108 -
Vivi1g05340 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 301 IPR018108 -
Vivi1g05340 315 PRINTS Mitochondrial carrier protein signature 128 146 IPR002067 GO:0055085
Vivi1g05340 315 PRINTS Mitochondrial carrier protein signature 31 45 IPR002067 GO:0055085
Vivi1g05340 315 PRINTS Mitochondrial carrier protein signature 79 99 IPR002067 GO:0055085
Vivi1g05340 315 PRINTS Mitochondrial carrier protein signature 222 244 IPR002067 GO:0055085
Vivi1g05340 315 PRINTS Mitochondrial carrier protein signature 18 31 IPR002067 GO:0055085
Vivi1g05340 315 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 16 306 IPR044712 GO:0006862|GO:0055085
Vivi1g05340 315 Gene3D Mitochondrial carrier domain 11 304 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05340 Vivi-Chr1 116655216 116661959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05340 1 309 Chloroplast and Mitochondria Gene Families AT2G47490 74.516 2.71e-160 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05340 K15115 - zju:107426265 506.138