Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05337 ATGGTGTCTCTGAAACTTCAGAAGCGGCTAGCCGCTAGCGTCCTCAAGTGTGGCAGAGGGAAGGTTTGGCTTGACCCTAATGAGGGCAATGAAATCTCCATGGCCAATTCACGCCAAAACATTAGGAAGTTGGTTAAGGATGGCTTTATTATCAGGAAGCCAACTAAGATCCACTCCCGTTCCCGTGCTAGGCGCATGAAGGAAGCCAAGAGGAAGGGTCGTCATTCTGGATATGGTAAGCGCAAGGGTACAAGAGAGGCAAGGCTCCCCACCAAGATCCTTTGGATGAGGAGGATGCGTGTCCTCAGGCGTTTGCTTCGCAAGTACCGAGAAGCAAAGAAAATTGACAAGCACATGTACCATGATATGTACATGAAGGTGAAGGGTAATGTCTTCAAGAACAAGAGAGTCCTTATGGAGAGTATTCACAAGTCCAAGGCCGAGAAGGCAAGAGAGAAGACGTTGTCTGATCAGTTTGAGGCCAAGAGGGCTAAGAACAAGGCAAGCAGGGAAAGGAAACATGCCCGAAGAGAAGAGCGTTTTGCTCAAGGTCCCGGTGAGAAGGCACCTGCAGCACCAGTGGCGGCACCAGCTGCAACAGCAACCCAGCCTGCCCAACCTTCAAAGAAATCCAAGAAGTAG 642 0.5031 MVSLKLQKRLAASVLKCGRGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERFAQGPGEKAPAAPVAAPAATATQPAQPSKKSKK 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05337 213 PANTHER 60S RIBOSOMAL PROTEIN L19 1 188 IPR039547 GO:0003723|GO:0003735|GO:0022625
Vivi1g05337 213 FunFam Ribosomal protein L19 1 56 - -
Vivi1g05337 213 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vivi1g05337 213 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vivi1g05337 213 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vivi1g05337 213 MobiDBLite consensus disorder prediction 144 213 - -
Vivi1g05337 213 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Vivi1g05337 213 FunFam Ribosomal protein L19 57 190 - -
Vivi1g05337 213 MobiDBLite consensus disorder prediction 57 85 - -
Vivi1g05337 213 MobiDBLite consensus disorder prediction 144 184 - -
Vivi1g05337 213 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Vivi1g05337 213 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Vivi1g05337 213 Gene3D - 57 188 - -
Vivi1g05337 213 MobiDBLite consensus disorder prediction 57 79 - -
Vivi1g05337 213 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05337 Vivi-Chr1 116549980 116551645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05337 1 213 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 83.568 7.53e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05337 K02885 - han:110942301 371.318