Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05335 ATGTGTGGCGGTGCTATCATCGCTGACTTCATTCCTCGCCGTGGAGGCCGCCGTCTCACTGCTTCCGAGCTCTGGCCTAACTCTCTCGGCCAACAGCTTAACTCCTCCTCGGAATTTGGTTTTCCTGATCAACAACCACCCTCTGCTCTCAAAAGATCAGACCCTCCCAAAGTTAGTGAACGAGTTGAAAAGCCTGTGAAAAAACAGAGGAAGAACCTCTACAGAGGAATCCGCCAGCGGCCATGGGGAAAATGGGCTGCGGAGATTCGTGATCCGAGAAAAGGTGTTCGTGTCTGGCTTGGTACATTCAACACTGCTGAAGAAGCTGCTAGAGCTTATGACAAAGAAGCTCGAAAAATCCGCGGCAAAAAAGCTAAGGTTAATTTCCCCAACGAAGATGATGCATATTCTATTCAAACTCGTCGTCACGGTAATATTCCTAATCCACCACCTATTCGACCACCGAACCCGAATCCGAATCTGAATCATTCTCTCTATCATCATCAACAACAATATCCAAAAAATCTGAACCTGGAGTTTGGTTATGATCTGAACCAAACTGAACCGTTTATAATATCTGGTTCTGGTGGTTCTGGTGGTGATGAGAATTCTGTATATGGGTCTGGTTCTTGTTCTGAGGTTGGTTACTCTGTGCTGGAGTTCAATGGTTCTAATCAGAATGAAAACGGTTATTTCGGTGGTGTTGTGGTGAATGAACATGAGAAAGAGAAAGAGAAGGTGAAAGAGAAAGTGAAAGAATCAAAAGAACAAGAAGCACGTGCTGTTGTTAGTATTGATCAAGCTGAAGCTGAAGCGGCAAAGAATGAAGTTCAAGAGTTGTCTGATGAACTGATGGCATACGAGGATTACATGAAGTTTTATCAGATTTACTATGATGGACAGTCGATGCCACCGAATATTGTTCAGGAGCAAGTTGTTGGGGATTTATGGAGCTTTGATTGA 963 0.4424 MCGGAIIADFIPRRGGRRLTASELWPNSLGQQLNSSSEFGFPDQQPPSALKRSDPPKVSERVEKPVKKQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEDDAYSIQTRRHGNIPNPPPIRPPNPNPNLNHSLYHHQQQYPKNLNLEFGYDLNQTEPFIISGSGGSGGDENSVYGSGSCSEVGYSVLEFNGSNQNENGYFGGVVVNEHEKEKEKVKEKVKESKEQEARAVVSIDQAEAEAAKNEVQELSDELMAYEDYMKFYQIYYDGQSMPPNIVQEQVVGDLWSFD 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05335 320 Pfam AP2 domain 74 122 IPR001471 GO:0003700|GO:0006355
Vivi1g05335 320 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Vivi1g05335 320 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Vivi1g05335 320 MobiDBLite consensus disorder prediction 34 67 - -
Vivi1g05335 320 PANTHER DNA-BINDING DOMAIN 54 278 IPR044808 GO:0003700|GO:0009873
Vivi1g05335 320 CDD AP2 74 131 IPR001471 GO:0003700|GO:0006355
Vivi1g05335 320 Coils Coil 237 290 - -
Vivi1g05335 320 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Vivi1g05335 320 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Vivi1g05335 320 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Vivi1g05335 320 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Vivi1g05335 320 FunFam Ethylene-responsive transcription factor 2 72 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05335 Vivi-Chr1 116536517 116538024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05335 1 131 AP2-EREBP Transcription Factor Family AT3G16770 54.610 4.26e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g05335 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05335 K09286 - gmx:100819416 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05335 1 116536517 116538024 Vivi1g05335 1 116536517 116538024 ECH