Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05321 ATGGCACCACAAATGCAAATTCAAACACCAAACACTAATAACACCACTGAAAACAATAACCATACATCATCTTCGGTTGTCGGTCCTCGCCCCCGATGGCGTCCCCTTGGGTCGAAGAATAAGTCTAAGGTTCCTGTCACAAACACAAGTGGCAATCCTGATGGCCATGTTTTTGAGATATCTGCTGGAGCAGATGTCTCAAAGAGTATCTTTAATTATGTTTGTCGTCGAAGGAGACGCATAAACATCATTAGTGGAAATGGAGAGGTGGCGCAAGCTACACTTCGTCAATCAACAGGAAAAGTTGTAACTCTTTGTGGAAGATTCCAAATTATTGCGATATGTGGAACAATTTTTCCTTCGCATGCACCAAGGATGGAGTGTGGATTGGAAGTTTTATTGTCTGGTACTGAAGGACAAGTGGCTAGGGGTAATGTGATTCCCCCTTTGGTGGCTTTCAACTCCGTGTTTTTGGTTGGAACTCCTATTGCAAAAATTGTATTTGAAAATGTGTCTTTGGAAGCTTACAACCAGAATAAACAAAAAGAAGTTAGCTGTGATGCAAATGGACATGTGGCAAAAGGTGGTGGTGGTTTGTTAAATGGTGAAGGATCAACAACTTAA 624 0.4167 MAPQMQIQTPNTNNTTENNNHTSSSVVGPRPRWRPLGSKNKSKVPVTNTSGNPDGHVFEISAGADVSKSIFNYVCRRRRRINIISGNGEVAQATLRQSTGKVVTLCGRFQIIAICGTIFPSHAPRMECGLEVLLSGTEGQVARGNVIPPLVAFNSVFLVGTPIAKIVFENVSLEAYNQNKQKEVSCDANGHVAKGGGGLLNGEGSTT 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05321 207 ProSiteProfiles PPC domain profile profile. 48 184 IPR005175 -
Vivi1g05321 207 Pfam Plants and Prokaryotes Conserved (PCC) domain 56 159 IPR005175 -
Vivi1g05321 207 SUPERFAMILY AF0104/ALDC/Ptd012-like 54 168 - -
Vivi1g05321 207 CDD DUF296 56 152 IPR005175 -
Vivi1g05321 207 MobiDBLite consensus disorder prediction 1 27 - -
Vivi1g05321 207 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 12 195 IPR014476 GO:0003680
Vivi1g05321 207 MobiDBLite consensus disorder prediction 1 51 - -
Vivi1g05321 207 Gene3D - 55 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05321 Vivi-Chr1 116251285 116251908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05321 11 174 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 42.077 1.32e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05321 - - vvo:131651779 167.933