Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05304 ATGGTCAGAAAAATATCATACCTTACCTTACTGCTTGCATTTTTATTTCTTTCATTCTTTGCAAATACTAGCCAGTTGGCATTTGCAAAAGGAACAGACAATGTCAGAGAAGCTTGCAAAGTAACTAGGTATCAAAACCTTTGTATGCGCTCCCTAGCACCGTTCTCTAACAGTGCTGGACGAAGCCCTAGTAAGTGGGCGAGGGCAGGAGTATCGGTTACAATCGGAGAGGCTAAGAATGTTCAAGCTTATCTGTCAAGCTTCAAGAGGCACGAGCATTTAAGAGGAAGAAATAAAGTTGCACTTTTAGATTGTGTTGAAACTTTTGCAGATGCCATTGACGATCTTCATAGGTCACTGAATGTGCTCAGAAGGCTTAGCAGAAGCACATTTGGCACCCAAATGGGAGACCTTAATACATGGTTAAGTTCCGCCCTCACAAATGAAGATACTTGCCTTGATGGATTTCAAGGCAAAAGTGATAAGAAAATTAAATCGCTGCAAAATAAGGTTCGCAAAGTTTATTATGTAACCAGTAATACTCTAGCTCTTGTCAACAAGCTTGCCACTACAGGTCTAGGAAGCATTTCTGATCCATAG 600 0.4083 MVRKISYLTLLLAFLFLSFFANTSQLAFAKGTDNVREACKVTRYQNLCMRSLAPFSNSAGRSPSKWARAGVSVTIGEAKNVQAYLSSFKRHEHLRGRNKVALLDCVETFADAIDDLHRSLNVLRRLSRSTFGTQMGDLNTWLSSALTNEDTCLDGFQGKSDKKIKSLQNKVRKVYYVTSNTLALVNKLATTGLGSISDP 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05304 199 NCBIfam pectinesterase inhibitor domain 7 188 IPR006501 GO:0004857
Vivi1g05304 199 SMART PMEI_2 30 184 IPR006501 GO:0004857
Vivi1g05304 199 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 190 IPR035513 -
Vivi1g05304 199 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 188 IPR035513 -
Vivi1g05304 199 PANTHER PECTINESTERASE INHIBITOR-LIKE 11 184 - -
Vivi1g05304 199 Pfam Plant invertase/pectin methylesterase inhibitor 34 184 IPR006501 GO:0004857
Vivi1g05304 199 CDD PMEI-like_3 38 190 - -
Vivi1g05304 199 FunFam Pectinesterase inhibitor 3 30 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05304 Vivi-Chr1 115848781 115851359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05304 35 193 Carbohydrate Esterase AT3G14310 32.515 1.70e-18 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05304 - - gmx:100791264 238.039