Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05295 ATGAAATTCTGCAAGACGTATCAGGAATTCATGCGAGGTCAGGAGCAGAAGAAGCTCCCTGTCGTTGGATTCAAGAAGCTCAAAAAGATCATGAAAACGTGTCGACGATCTTCTCCGTACCATAGAACCTGCCCTGATCAATGCACTGTGTGCGATGGGACCTTTTTCCCTTCCCTTCTCAATGAAATGTCAGAAATAGTGGGATGCTTTAATGAGCGTGCACAGAAATTGCTGGAACTGCATCTTGCTTCTGGATTCAGAAAGTACATCATCTTATTGAAAGGGAAATCAAAAAGGAATCATTCTACTTTAGTTCATGAAGGCAAAGATCTAGTAGTATATGCACTTATAAACGCTGTTGCAATTCGCAAAATACTAAAGAAATATGATAAGATTCATTATTCCAAACAAGGGCAATTATTCAAGTCACAAGCTCAGACTATGCATAAGGAAATTCTTCAGAGTCCATGGCTTATTGAGCTTATGGCATTACATATCAATTTAAGGGAAACTAAATCCAAGTCGAGGAAGTCATCTGCATTATTTGATGAATGTTATCTCACAATTAAGGATGGAAAACCATCACTTGCTTGTGAGCTCTTTGATTCCATCAAAGTTGATATTGACTTGACTTGCTCTATATGTTTGGACACAGTGTTTGATCCAGTTTCTCTGTCCTGTGGCCACATATTCTGCTACAGTTGTGCTTGCTCGTCTGCATCTGTTACTATTGTTGATGGACTAAAGGAAGCACATTCTAAAGAGAAATGTCCTCTATGTCGATCGGCAGGAGTTTACGAAGGTGCTGTTCACTTGGAGGAATTAAACATTCTATTAGGCCGAAGCTGCACGGAGTACTGGGAGGAAAGACTTCAAATGGAGAGGGTAGAAAGGGTGAAGCAAGCAAAGGAGCATTGGGAAACACAGTGTAGAGCATTCATGGGGATCTAA 951 0.4048 MKFCKTYQEFMRGQEQKKLPVVGFKKLKKIMKTCRRSSPYHRTCPDQCTVCDGTFFPSLLNEMSEIVGCFNERAQKLLELHLASGFRKYIILLKGKSKRNHSTLVHEGKDLVVYALINAVAIRKILKKYDKIHYSKQGQLFKSQAQTMHKEILQSPWLIELMALHINLRETKSKSRKSSALFDECYLTIKDGKPSLACELFDSIKVDIDLTCSICLDTVFDPVSLSCGHIFCYSCACSSASVTIVDGLKEAHSKEKCPLCRSAGVYEGAVHLEELNILLGRSCTEYWEERLQMERVERVKQAKEHWETQCRAFMGI 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05295 316 Pfam Zinc finger, C3HC4 type (RING finger) 209 262 - -
Vivi1g05295 316 ProSiteProfiles SPX domain profile. 1 143 IPR004331 -
Vivi1g05295 316 ProSitePatterns Zinc finger RING-type signature. 227 236 IPR017907 -
Vivi1g05295 316 ProSiteProfiles Zinc finger RING-type profile. 212 261 IPR001841 -
Vivi1g05295 316 SMART ring_2 212 260 IPR001841 -
Vivi1g05295 316 SUPERFAMILY RING/U-box 205 263 - -
Vivi1g05295 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 314 IPR013083 -
Vivi1g05295 316 CDD SPX_BAH1-like 2 139 - -
Vivi1g05295 316 CDD RING-HC_BAH1-like 202 275 - -
Vivi1g05295 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 316 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05295 Vivi-Chr1 115732046 115736148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05295 209 262 C3H Transcription Factor Family AT4G28270 42.373 2.82e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05295 K16275 - gmx:100803060 539.265