Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05293 ATGTCTTCTTTAGATTCAACTTGGAGTTGGATTACATCTCTCTCATGTTCACCTTCTCCAGGTGATGCATTACCTGAATGGCTGAGATTCGTTTTTCTGTCACCGTGTTCTCAGAGAGTTCTTCTCTCAGCCGTTGATTTTTTGCTCTTGTTTACTCTATTACTATTTGCTATTATAAAGCTTTATTCTAGGTTCACTTCTAATGGAAGTACCAACTCAGAAGAAATCAACAAGCCTCTTATCAGTGACACAACAGCTTTGAGAACGAGGACGAGAACGAGAACGAGAACGACTCTATGGTTCAATCTAACTCTAATTGCAACGATAGTTTTGACTGTGTTGTACACTGTTGCTTGTATTTTAGTGTTTAGCAGTTCGGGGATTGAGTTTGAGTCGTCGTGGAAACAACTTGATGGATTCTTTTGGGTTGTTCAAGCAATAACTCAATTAGTCCTTGTAATCTTGATTATCCATGTTAAGAGATTCGAAGCTGTTGTTCATCCTTTATCGGTTCGAGTTTTCTGGGTTGCGAATTTCGTTGTTGTTTCTTTGTTCGCTGCTTCTGGTGTTGCGCGGTTGGTTTCTTTGGAGGGGAATGAGTCCTTTAGCTTTATGGTTGATGATGTTGTTTCTTTCATTTCGCTACCGGTTTCGCTTTTTCTGCTTGTTGTTGGTGTTAAAGGTTCCACTGGTGTTATTAAGTTGAGAGAAGAGAGTCACAGTGTTGTTGATAATGGTGAAGAAACAAAACTATATGATCATGGTTTGGATAAACCGGGTCTTACTACTGGTTTTGCTTCGGCTTCTCAGTTTTCTAGAACCTTTTGGATTTGGTTAAACCCTTTGTTGAGTAAAGGGTATGCTTCGCCGCTTAATATCGATGAAGTTCCGTACCTTTCTCCACAGCATAGAGCTGAGAGGATGTCTGTTATCTTTGAGTCAAAATGGCCTAAATTGGAAGAGAGATCGAAGTATCCGGTTAGAACCACGTTGCTTCGGTGTTTCTGGAAAGACATAATCTTCACTGCTTGTCTTGCTGTTATTAGGCTATCTGTTATGTTTGTTGGACCGGTATTAATTCAAGATTTTGTTGATTTCACTGCTGGAAAAGGTAGTTCTGTGTATGAAGGTTACTATCTAGTGCTGATTCTTCTTGTAGCCAAGTTTGTTGAAGTTTTAACAACTCATCATTTCAATTTCAACTCTCAGAAACTTGGAATGCTTATAAGATGCACTCTCATTACTTCTTTATATAAAAAGGGATTGAGGCTATCTTGTTCTGCAAGACAAGATCACGGTGTCGGTCCCATTGTGAATTACATGGCCGTTGATACGCAGCAGCTATCCGATATGATGCTTCAGTTACACGCGGTTTGGATGATGCCGTTTCAAGTTGGTATTGGTTTGTTTTTGCTTTACAATTCTCTCGGTGCTTCGGTGATCACCGCGTTTCTTTGCCTTCTACTTGTTCTCGTGTTTATCGTGGTGACAACTCGACAGAACAAAAACTATCAGTTTAAAGCTATGATAAGCCGCGATTCGAGAATGAAAGCTGTGAATGAGATGCTTAATTACATGCGTGTTATCAAGTTTCAGGCATGGGAAAATCATTTCAACAGTAGAATCGCAGGTTTCCGTGAGTCGGAATTCGGGTGGCTTTCGAAGTTTATGTACTCGATTTGTGGCAATATCATTGTATTATGGAGCGCTCCTATGTTGATATCAACTCTCACTTTCGGTACCGCGCTTTGGCTTGGAGTTAAACTTGATGCAGGAACTGTTTTCACTACAACAACTGTGTTTAAGATTCTGCAGGAACCTATTAGGACTTTTCCACAGTCAATGATATCTCTCTCACAAGCGTTGGTATCACTTGGGAGGTTGGATAGGTACATGTCTAGCAAGGAATTGAATGATGATTCGGTTGAGAGAAACGACGGCTGTGACGGAGAAATTGCTGTGGATGTTCAAGATGGTACCTTTAGTTGGGATGACGATGGCTTAGAACAAGACCTGAAAAATATTCATTTGAAGGTTAATAAAGGCGAACTCACAGCTATTGTCGGTACTGTAGGATCTGGAAAATCTTCTCTTCTTGCATCAATTCTTGGCGAAATGCACAGAATTTCTGGAAAGGTTCAAGTATGCGGGAGTACTGCTTATGTTGCGCAAACGTCTTGGATTCAAAACGGGACGATTGAAGAGAATATTCTCTTTGGTTTACCAATGAATAGACAGAAGTACAATGATGTTATCAGGGTTTGTTGTTTGGAGAAAGATTTAGAAATGATGGAATATGGGGATCAGACGGAGATTGGAGAGCGCGGCATCAACCTCAGCGGGGGTCAGAAGCAGCGTATACAGCTCGCAAGGGCTGTATACCAAGACTGTGACATATATCTTCTTGATGATGTCTTCAGCGCAGTAGATGCACATACTGGCACTGAAATATTTAAGGAATGTGTGAGGGGAGCTCTGAAAGGAAAGACCATAGTTCTTGTAACACACCAAGTAGACTTCTTACATAATGTCGATCGTATCGTGGTGATGAGGGAAGGAACGATAGTCCAATCGGGTCGGTACAACGACCTACTTGATTCTGGACTGGATTTCGGTATCCTGGTTGCAGCACATGAGACATCTATGGAACTTGTAGAACAAGGCGCGGCCATGCCTGGTGAACCGACGATAACTAAGTCCGCGTCTAATAACAGCAGAGAAGCCAATGGTGAAAGTAATTCGCTTGACCAACCTAAATCTGCTAATGGAAGTTCTAAACTTGTCAAAGAAGAAGAAAGAGAAACTGGTAAAGTTAGCTTTAATATCTATAAACTCTACTGCACCGAGGCTTTTGGATGGATAGGGATTTTCGCGGTACTCTTTCTTTCTGTGTTGTGGCAAGCATCTATGATGGCTAGTGATTATTGGCTGGCATATCAAACATCGGTCAAGCGTGCTGAATTTTTCAATCCTTCTTTGTTTATTTCCGTCTACGCAATTATTAGCGTTGTTTCAGTTCTTCTGATAGTGCTGAGATCCTACTCAGTCACGATCTTTGGGTTGAAAACAGCACAGATTTTCTTCAATCAAATTCTTAATAGCATCTTGCATGCTCCAATGTCTTTCTACGATACTACTCCATCAGGAAGAATTCTAAGCAGGGCTTCCTCTGATCAGACAAATGTCGATATCTACATCCCTTTGTTCATCAATTTTGTGGTGGCCATGTATATTACAGTCATCAGCATCATCATCGTTACATGCCAAAATTCATGGCCAACAGCTTTCTTGCTGATTCCTCTTGTTTGGTTGAACATTTGGTACCGGGGCTATTTTCTTTCTACTTCTCGTGAGTTAACTAGGCTAGATTCAATTACAAAAGCACCTGTGATTGTTCATTTCTCCGAAAGTATTTCCGGGGTAATGACGGTCCGTGCATTCAGAAAACAGAAAGAGTTTAGTTTAGAAAACATCAGACGAGTAAATTCTAACTTGCGAATGGATTTCCACAACTTCAGTGCCAATGCGTGGTTGGGTTTCCGCTTAGAATTGCTTGGAAGCTTGATTTTCTGCATGTCTACTTTGTTCATGATCATATTACCTAGCAGTATAATAAAGCCAGAAAACGTTGGTTTATCTCTCTCCTATGGATTGTCGTTGAATGGAGTGATGTTCTGGGCCATATACATGAGCTGTTTCATTGAAAACAAAATGGTATCTGTTGAGAGGATAAAACAGTTCTCGAATATTCCATCAGAAGCCGCGTGGAACATTAAGGATCGCTCTCCTCCCCCGAATTGGCCTGGTCAAGGCCATGTTGATATCAAAGACTTGCAGGTCAGATATCGTCCGAACACTCCTTTGGTTCTTAAAGGCATTACTCTAAGCATTAACGGAGGAGAAAAGATTGGCGTTGTTGGTCGAACTGGGAGTGGAAAGTCAACTTTAATTCAAGTTTTCTTTAGGCTGGTGGAACCTACCGGAGGCAAAATAATCATCGATGGCATTGACATATCTGCCTTAGGACTTCATGATCTCAGGTCTCGATTTGGTATCATCCCTCAGGAGCCTGTCCTTTTCGAAGGTACCGTCAGAAGTAACATTGATCCAACTGGACAGTATACAGATGATGAGATATGGAAGAGTTTGGAGCGCTGTCAACTAAAAGACTCGGTAGCTTCAAAGCCCGAGAAACTTGACTCATTAGTGGTTGACAATGGAGATAACTGGAGTGTTGGGCAGAGGCAGTTGCTTTGTTTAGGGAGAGTCATGCTTAAGCAAAGCAGGTTGTTATTCATGGACGAGGCTACAGCTTCTGTCGATTCTCAAACCGATGCAGTAATTCAGAAGATCATCAGAGAGGACTTTGCAGCGCGTACTATCATCAGCATTGCTCATAGAATACCAACAGTGATGGACTGTGATCGAGTGTTAGTTGTAGATGCAGGGCGCGTGAAAGAATTTGACACGCCTACGAACTTGCTCCAGAGGCAATCGTTGTTTGCAGCTTTGGTTCAAGAGTATGCCAACCGTTCAACTGGACTATAA 4548 0.4158 MSSLDSTWSWITSLSCSPSPGDALPEWLRFVFLSPCSQRVLLSAVDFLLLFTLLLFAIIKLYSRFTSNGSTNSEEINKPLISDTTALRTRTRTRTRTTLWFNLTLIATIVLTVLYTVACILVFSSSGIEFESSWKQLDGFFWVVQAITQLVLVILIIHVKRFEAVVHPLSVRVFWVANFVVVSLFAASGVARLVSLEGNESFSFMVDDVVSFISLPVSLFLLVVGVKGSTGVIKLREESHSVVDNGEETKLYDHGLDKPGLTTGFASASQFSRTFWIWLNPLLSKGYASPLNIDEVPYLSPQHRAERMSVIFESKWPKLEERSKYPVRTTLLRCFWKDIIFTACLAVIRLSVMFVGPVLIQDFVDFTAGKGSSVYEGYYLVLILLVAKFVEVLTTHHFNFNSQKLGMLIRCTLITSLYKKGLRLSCSARQDHGVGPIVNYMAVDTQQLSDMMLQLHAVWMMPFQVGIGLFLLYNSLGASVITAFLCLLLVLVFIVVTTRQNKNYQFKAMISRDSRMKAVNEMLNYMRVIKFQAWENHFNSRIAGFRESEFGWLSKFMYSICGNIIVLWSAPMLISTLTFGTALWLGVKLDAGTVFTTTTVFKILQEPIRTFPQSMISLSQALVSLGRLDRYMSSKELNDDSVERNDGCDGEIAVDVQDGTFSWDDDGLEQDLKNIHLKVNKGELTAIVGTVGSGKSSLLASILGEMHRISGKVQVCGSTAYVAQTSWIQNGTIEENILFGLPMNRQKYNDVIRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGTEIFKECVRGALKGKTIVLVTHQVDFLHNVDRIVVMREGTIVQSGRYNDLLDSGLDFGILVAAHETSMELVEQGAAMPGEPTITKSASNNSREANGESNSLDQPKSANGSSKLVKEEERETGKVSFNIYKLYCTEAFGWIGIFAVLFLSVLWQASMMASDYWLAYQTSVKRAEFFNPSLFISVYAIISVVSVLLIVLRSYSVTIFGLKTAQIFFNQILNSILHAPMSFYDTTPSGRILSRASSDQTNVDIYIPLFINFVVAMYITVISIIIVTCQNSWPTAFLLIPLVWLNIWYRGYFLSTSRELTRLDSITKAPVIVHFSESISGVMTVRAFRKQKEFSLENIRRVNSNLRMDFHNFSANAWLGFRLELLGSLIFCMSTLFMIILPSSIIKPENVGLSLSYGLSLNGVMFWAIYMSCFIENKMVSVERIKQFSNIPSEAAWNIKDRSPPPNWPGQGHVDIKDLQVRYRPNTPLVLKGITLSINGGEKIGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIDISALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDDEIWKSLERCQLKDSVASKPEKLDSLVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQKIIREDFAARTIISIAHRIPTVMDCDRVLVVDAGRVKEFDTPTNLLQRQSLFAALVQEYANRSTGL 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05293 1515 SUPERFAMILY ABC transporter transmembrane region 953 1253 IPR036640 GO:0005524|GO:0016020
Vivi1g05293 1515 FunFam ABC transporter C family member 10 323 636 - -
Vivi1g05293 1515 MobiDBLite consensus disorder prediction 896 924 - -
Vivi1g05293 1515 FunFam ABC transporter C family member 3 1256 1507 - -
Vivi1g05293 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1263 1506 IPR027417 -
Vivi1g05293 1515 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 340 620 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g05293 1515 CDD ABC_6TM_ABCC_D2 956 1248 IPR044726 GO:0140359
Vivi1g05293 1515 ProSitePatterns ABC transporters family signature. 779 793 IPR017871 GO:0005524|GO:0016887
Vivi1g05293 1515 SUPERFAMILY ABC transporter transmembrane region 331 635 IPR036640 GO:0005524|GO:0016020
Vivi1g05293 1515 SMART AAA_5 1299 1483 IPR003593 GO:0016887
Vivi1g05293 1515 SMART AAA_5 681 854 IPR003593 GO:0016887
Vivi1g05293 1515 CDD ABCC_MRP_domain2 1271 1491 - -
Vivi1g05293 1515 MobiDBLite consensus disorder prediction 893 930 - -
Vivi1g05293 1515 Gene3D ABC transporter type 1, transmembrane domain 329 629 IPR036640 GO:0005524|GO:0016020
Vivi1g05293 1515 Gene3D ABC transporter type 1, transmembrane domain 920 1254 IPR036640 GO:0005524|GO:0016020
Vivi1g05293 1515 FunFam ABC transporter C family member 4 637 895 - -
Vivi1g05293 1515 CDD ABC_6TM_ABCC_D1 341 628 IPR044746 GO:0140359
Vivi1g05293 1515 Pfam ABC transporter 672 805 IPR003439 GO:0005524
Vivi1g05293 1515 CDD ABCC_MRP_domain1 654 854 - -
Vivi1g05293 1515 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 957 1236 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g05293 1515 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 266 1508 - -
Vivi1g05293 1515 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 654 877 IPR003439 GO:0005524
Vivi1g05293 1515 Pfam ABC transporter transmembrane region 340 607 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g05293 1515 Pfam ABC transporter transmembrane region 957 1209 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi1g05293 1515 Pfam ABC transporter 1290 1438 IPR003439 GO:0005524
Vivi1g05293 1515 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1273 1507 IPR003439 GO:0005524
Vivi1g05293 1515 Gene3D - 630 890 IPR027417 -
Vivi1g05293 1515 Gene3D - 1256 1507 IPR027417 -
Vivi1g05293 1515 FunFam ABC transporter C family member 5 919 1254 - -
Vivi1g05293 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 653 868 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05293 Vivi-Chr1 115688282 115694623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05293 610 870 Calmodulin-binding Proteins AT2G36910 29.856 1.10e-23 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05293 - K05666 gmx:100793361 2423.66