LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g05286	ATGGTTGAAACCAGACGCAGTTCATCTGCTTCCAAACGTTCTCTTTCTTCTCCTTCATCTTCTTCTTCTCCTCGTTCTAACACTAAACGATCCAAGGTTTCTAAGGATGTTTCATCCACCGCTAATCCCTCACCGCTGGTCAACGAATCTGGTGAACAGAAGATACGGTTGTCTGATCTGCAAGAAACGGCGTCGTTGAAGGCTGTTGGTGGTGAGACTGAGAACCAGAAATCTGCTTCTGTTTTGGTGTCTCCTGCTCAGTGTCTAGAATCAGGTGGGATTGCGGAGAAATCCAACGGGTTGCCGCCGTTAGCTCGGTCGAAGAAACGGTGCATAAAATCGAGTCCTGAGTGTGCTTGGGGGAGGCTCATTTCTCAATCTTCTGAGAATCCTCACTTGCCCATATTTGAACCTATCTACACTGTTGGTCAATGTCGTCAATGTAATTTATGGATTAAGGATCCCGATGTTAGCACTGTTTTGTGCAAATTGAGCCACATTGAGCATGGAGGTTCATCTGTTGCATTGCTGGAAGTCATAGGGAGTAAAGGTGAAGTGAAAGTTAACGGAAAGATATACGGGAAGAAATGCCGTCTTATTTTGAGTGGAGGTGATGAAGTTATCTTTGGTTTTTCCAGCAAGCAGGCTTATATATTTCAGCAGCTCCATAATAATACCTCTACTGCCAATATACCTCCTCCCGTGAGCATTTTCGAAACCCAGGGTGCTCCAATAATTGGAGCGCAAATTGAAGCTAGACCTGGAGACCTGTCTGCTGTTGCTGGGGCTTCAATATTGGCCTCTTTTTCTAATTTTAATGAAGATTTATCTCTCATTTCACCCCCTGCTAACACCGGCACGAACACGCAGCAGCAGACTGACGCTTCATTACTACCTGCTGGCAACGGGGATGATAAGGCAAATGTTGATGTGAAGCACAACACCATTAATAACGAACCAGATGGAGTTTATATTGAGGAAACTGGTTGTCCATCCTCTACCACCGTTACTGAAGATCCTAAGGTTGACGCTGTAGAAGTCAATGTCAATGTCGATGCAGATGTTGGGAAGATGACTGCTGCTTCAAGCGAATTGAGACCATTAGTCTGTCCTGATTTAGATTTAAGTGGCAAGATTACTAAGATTTTGGAAAAAAATAAGGAATTGAAGGAACGCCTTAAAAGTGTTGATACCCAAAATATATTGGCATCACCCAAGCAACAAGCTCTTAAAGATAGTTTACAGATGAAAATTCTCAATACTGAGAATATCGATGTTTCATTTGAAAGTTTCCCATACTTTCTTAGTGACATAACAAAGAATGTTTTGATTGCTTCTGCGTACATTCATTTGAAGTGCAATGACTCTGGAAAATATGTTTCTGACCTTCCATCGTTGTCCCCACGGATATTGTTATCTGGCCCTACAGGCTCAGAAATATATCAGGAAACTCTGTCCAAGGCACTTGCAAAGCATTTTGGTGCATGGCTACTAATTGTGGACTCTCTTTCACTTCCTGGTCGAACTCCATCGAAGGAAGTTGAAGCTACTAAAGAAAGTTCAAGGCCTGAAAGACCTGTGTTTATTAAGAGAAGTAGTGCTCAGGCTGCTACATTACAACATAAGAAACCGACTTCTGGTGTTGATGCCCAAATTATAGGTGGATCCGCAGTAAGTTCACAGTTTATACTGAAGCAAGAAGTTTCTACGTCATCGTCAAAAGGCATTACTCTTAAAGCAGGTGATCGGGTGAAGTTTGTAGGTGACTTCCCTTCTACTGTCTCACCACCGCAAGTTTTTCTGTCAAGAGGACCAAGTTATGGCTACAAGGGCAGAGTTCTCATTGCTTTTGAAAACAACCGGTCTTCAAAAATTGGGGTTAGATTTGAGAAACCAATTCCAGATGGAAATGATCTTGGAGGCCTCTGCGAAAGTGATCATGGTTTCTTTTGTTCTGCCAATCATTTAGTACTGGTAGATGGCTCTGGAGGGGATGACTCTAGCAAAGTTGCTATTAATGAAATTTTTGAGATTGCCTCTAATCTGAGTAAAACTGGACCGTTGGTGTTGTTGATTAAAGATATCGAGAAGGGTGTGCCCGGGAATTCAGAAATTTTGAAAAGTAAATTCGGAAGCTTGCCACAGAATGTTGTAGTAATTGGTTCACATATCCAACCGGACAACCGTAAGGAGAAGACACAACCTGGAAGCCTTCTGTTCACAAAATTTGGAGGCAATCAGACAGCACTACTTGATCTTGCTTTTCCGGATAACTTTACTAGACTGCATGATAGGAGCAAAGAAACCCCCAAAGTCATGAAGCAACTCAATAGGCTTTTCCCAAACAAGGTTACAATACAGCTGCCTCAGGATGAGAGTTTACTTGCTGATTGGAAGCAACAGCTAGATCGTGACATAGAAACTATGAAAGCTCAGTCCAACGTTGCCAGCATTCGCCTAGTCCTCAACAAGTTTGGACTGGATTGCTCTGACCTTGAGACTCTTTGCATCAAAGATGAAACTCTAACAACTGAAAGCGTGGAGAAGATCATTGGTTGGGCTATAAGTTATCATTTTATGCATTCATCTGAAGTTTCTACCAAAGAATCAAAGCCTGTAATATCTGCAGAGAGCGTTCGGTATGGGTTTAACATTCTACAGGGCATTCAAGATGAAAACAAGAGCACAAAAACATCACTCAAGGACGTAGTTACTGAGAATGAGTTTGAGAAAAAACTGCTTGGTGATGTTATTCCACCAACTGATATTGGGGTCTCATTTGATGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTAAAGGAATTGGTTATGCTTCCTCTTCAAAGGCCTGAATTGTTTTGCAAAGGACAACTAACTAAGCCTTGCAAGGGAATCTTACTTTTTGGCCCTCCTGGCACTGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCCGGAGCAAATTTTATTAACATTTCCATGTCTAGCATTACTTCAAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTTTCTCTTGCCAGCAAAATTGCTCCAAGCGTTATTTTTGTTGATGAGGTTGATAGTATGTTAGGGAGACGTGAAAATCCTAGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAAAAGATAGAGAGCGTGTGCTTGTTCTTGCTGCCACAAACAGACCTTTTGATCTAGATGAGGCTGTTATTAGGAGGCTTCCACGAAGATTGATGGTTAATTTGCCAGATGCAACAAACAGAGCGAAAATTATGAGAGTCATTTTAGCAAAAGAAGATTTGGCGCCCGATGTTGATTTAGAGGCATTAGCAAGTATGACTGATGGATACTCCGGAAGTGACCTAAAGAATCTGTGTGTCACAGCAGCACACTGTCCGATAAGAGAGATCTTGGTGAAGGAAAAGAAGGATAGAAGCTTTGCATTGGCTGAGAACAAACCTTTACCTGGTCTGTGTAGCAGTGCCGACATTCGTCCCTTGAAGATGGAAGATTTTAAATATGCACACGAGCAGGTGTGTGCAAGCGTGTCATCAGATTCGTCAAATATGAACGAACTACTCCAATGGAATGACCTCTACGGAGAAGGTGGATCAAGGAAAAAGACATCTTTGAGCTATTTCATGTAA	3693	0.42	MVETRRSSSASKRSLSSPSSSSSPRSNTKRSKVSKDVSSTANPSPLVNESGEQKIRLSDLQETASLKAVGGETENQKSASVLVSPAQCLESGGIAEKSNGLPPLARSKKRCIKSSPECAWGRLISQSSENPHLPIFEPIYTVGQCRQCNLWIKDPDVSTVLCKLSHIEHGGSSVALLEVIGSKGEVKVNGKIYGKKCRLILSGGDEVIFGFSSKQAYIFQQLHNNTSTANIPPPVSIFETQGAPIIGAQIEARPGDLSAVAGASILASFSNFNEDLSLISPPANTGTNTQQQTDASLLPAGNGDDKANVDVKHNTINNEPDGVYIEETGCPSSTTVTEDPKVDAVEVNVNVDADVGKMTAASSELRPLVCPDLDLSGKITKILEKNKELKERLKSVDTQNILASPKQQALKDSLQMKILNTENIDVSFESFPYFLSDITKNVLIASAYIHLKCNDSGKYVSDLPSLSPRILLSGPTGSEIYQETLSKALAKHFGAWLLIVDSLSLPGRTPSKEVEATKESSRPERPVFIKRSSAQAATLQHKKPTSGVDAQIIGGSAVSSQFILKQEVSTSSSKGITLKAGDRVKFVGDFPSTVSPPQVFLSRGPSYGYKGRVLIAFENNRSSKIGVRFEKPIPDGNDLGGLCESDHGFFCSANHLVLVDGSGGDDSSKVAINEIFEIASNLSKTGPLVLLIKDIEKGVPGNSEILKSKFGSLPQNVVVIGSHIQPDNRKEKTQPGSLLFTKFGGNQTALLDLAFPDNFTRLHDRSKETPKVMKQLNRLFPNKVTIQLPQDESLLADWKQQLDRDIETMKAQSNVASIRLVLNKFGLDCSDLETLCIKDETLTTESVEKIIGWAISYHFMHSSEVSTKESKPVISAESVRYGFNILQGIQDENKSTKTSLKDVVTENEFEKKLLGDVIPPTDIGVSFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPSEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDATNRAKIMRVILAKEDLAPDVDLEALASMTDGYSGSDLKNLCVTAAHCPIREILVKEKKDRSFALAENKPLPGLCSSADIRPLKMEDFKYAHEQVCASVSSDSSNMNELLQWNDLYGEGGSRKKTSLSYFM	1230

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g05286	1230	ProSitePatterns	AAA-protein family signature.	1069	1088	IPR003960	GO:0005524\|GO:0016887
	Vivi1g05286	1230	SMART	AAA_5	962	1099	IPR003593	GO:0016887
	Vivi1g05286	1230	Coils	Coil	379	399	-	-
	Vivi1g05286	1230	MobiDBLite	consensus disorder prediction	1	54	-	-
	Vivi1g05286	1230	FunFam	p-loop nucleoside triphosphate hydrolase superfamily protein	924	1100	-	-
	Vivi1g05286	1230	CDD	RecA-like_ATAD1	929	1095	-	-
	Vivi1g05286	1230	MobiDBLite	consensus disorder prediction	280	298	-	-
	Vivi1g05286	1230	MobiDBLite	consensus disorder prediction	1	51	-	-
	Vivi1g05286	1230	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	408	1229	-	-
	Vivi1g05286	1230	Gene3D	-	1098	1192	-	-
	Vivi1g05286	1230	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	925	1204	IPR027417	-
	Vivi1g05286	1230	MobiDBLite	consensus disorder prediction	280	304	-	-
	Vivi1g05286	1230	Gene3D	-	924	1203	IPR027417	-
	Vivi1g05286	1230	Pfam	AAA+ lid domain	1119	1152	IPR041569	-
	Vivi1g05286	1230	SUPERFAMILY	SMAD/FHA domain	120	217	IPR008984	GO:0005515
	Vivi1g05286	1230	Gene3D	-	119	229	-	-
	Vivi1g05286	1230	Pfam	ATPase family associated with various cellular activities (AAA)	966	1095	IPR003959	GO:0005524\|GO:0016887

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g05286	Vivi-Chr1	115574423	115585974	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g05286	961	1166	Calmodulin-binding Proteins	AT3G56690	36.190	4.56e-31	130

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g05286	-		-	gmx:100801477	1743.78