Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05285 ATGGTTGAAACCAGACGCAGTTCATCTGCTTCCAAACGTTCTCTTTCTTCTCCTTCATCTTCTTCTTCTCCTCGTTCTAACACTAAACGATCCAAGGTTTCTAAGGATGTTTCATCCACCGCTAATCCCTCACCGCTGGTCAACGAATCTGGTGAACAGAAGATACGGTTGTCTGATCTGCAAGAAACGGCGTCGTTGAAGGCTGTTGGTGGTGAGACTGAGAACCAGAAATCTGCTTCTGTTTTGGTGTCTCCTGCTCAGTGTCTAGGTGGGATTGCGGAGAAATCCAACGGGTTGCCGCCGTTAGCTCGGTCGAAGAAACGGTGCATAAAATCGAGTCCTGAGTGTGCTTGGGGGAGGCTCATTTCTCAATCTTCTGAGAATCCTCACTTGCCCATATTTGAACCTATCTACACTGTTGGTCAATGTCGTCAATGTAATTTATGGATTAAGGATCCCGATGTTAGCACTGTTTTGTGCAAATTGAGCCACATTGAGCATGGAGGTTCATCTGTTGCATTGCTGGAAGTCATAGGGAGTAAAGGTGAAGTGAAAGTTAACGGAAAGATATACGGGAAGAAATGCCGTCTTATTTTGAGTGGAGGTGATGAAGTTATCTTTGGTTTTTCCAGCAAGCAGGCTTATATATTTCAGCAGCTCCATAATAATACCTCTACTGCCAATATACCTCCTCCCGTGAGCATTTTCGAAACCCAGGGTGCTCCAATAATTGGAGCGCAAATTGAAGCTAGACCTGGAGACCTGTCTGCTGTTGCTGGGGCTTCAATATTGGCCTCTTTTTCTAATTTTAATGAAGATTTATCTCTCATTTCACCCCCTGCTAACACCGGCACGAACACGCAGCAGCAGACTGACGCTTCATTACTACCTGCTGGCAACGGGGATGATAAGGCAAATGTTGATGTGAAGCACAACACCATTAATAACGAACCAGATGGAGTTTATATTGAGGAAACTGGTTGTCCATCCTCTACCACCGTTACTGAAGATCCTAAGGTTGACGCTGTAGAAGTCAATGTCAATGTCGATGCAGATGTTGGGAAGATGACTGCTGCTTCAAGCGAATTGAGACCATTAGTCTGTCCTGATTTAGATTTAAGTGGCAAGATTACTAAGATTTTGGAAAAAAATAAGGAATTGAAGGAACGCCTTAAAAGTGTTGATACCCAAAATATATTGGCATCACCCAAGCAACAAGCTCTTAAAGATAGTTTACAGATGAAAATTCTCAATACTGAGAATATCGATGTTTCATTTGAAAGTTTCCCATACTTTCTTAGTGACATAACAAAGAATGTTTTGATTGCTTCTGCGTACATTCATTTGAAGTGCAATGACTCTGGAAAATATGTTTCTGACCTTCCATCGTTGTCCCCACGGATATTGTTATCTGGCCCTACAGGCTCAGAAATATATCAGGAAACTCTGTCCAAGGCACTTGCAAAGCATTTTGGTGCATGGCTACTAATTGTGGACTCTCTTTCACTTCCTGGTCGAACTCCATCGAAGGAAGTTGAAGCTACTAAAGAAAGTTCAAGGCCTGAAAGACCTGTGTTTATTAAGAGAAGTAGTGCTCAGGCTGCTACATTACAACATAAGAAACCGACTTCTGGTGTTGATGCCCAAATTATAGGTGGATCCGCAGTAAGTTCACAGTTTATACTGAAGCAAGAAGTTTCTACGTCATCGTCAAAAGGCATTACTCTTAAAGCAGGTGATCGGGTGAAGTTTGTAGGTGACTTCCCTTCTACTGTCTCACCACCGCAAGTTTTTCTGTCAAGAGGACCAAGTTATGGCTACAAGGGCAGAGTTCTCATTGCTTTTGAAAACAACCGGTCTTCAAAAATTGGGGTTAGATTTGAGAAACCAATTCCAGATGGAAATGATCTTGGAGGCCTCTGCGAAAGTGATCATGGTTTCTTTTGTTCTGCCAATCATTTAGTACTGGTAGATGGCTCTGGAGGGGATGACTCTAGCAAAGTTGCTATTAATGAAATTTTTGAGATTGCCTCTAATCTGAGTAAAACTGGACCGTTGGTGTTGTTGATTAAAGATATCGAGAAGGGTGTGCCCGGGAATTCAGAAATTTTGAAAAGTAAATTCGGAAGCTTGCCACAGAATGTTGTAGTAATTGGTTCACATATCCAACCGGACAACCGTAAGGAGAAGACACAACCTGGAAGCCTTCTGTTCACAAAATTTGGAGGCAATCAGACAGCACTACTTGATCTTGCTTTTCCGGATAACTTTACTAGACTGCATGATAGGAGCAAAGAAACCCCCAAAGTCATGAAGCAACTCAATAGGCTTTTCCCAAACAAGGTTACAATACAGCTGCCTCAGGATGAGAGTTTACTTGCTGATTGGAAGCAACAGCTAGATCGTGACATAGAAACTATGAAAGCTCAGTCCAACGTTGCCAGCATTCGCCTAGTCCTCAACAAGTTTGGACTGGATTGCTCTGACCTTGAGACTCTTTGCATCAAAGATGAAACTCTAACAACTGAAAGCGTGGAGAAGATCATTGGTTGGGCTATAAGTTATCATTTTATGCATTCATCTGAAGTTTCTACCAAAGAATCAAAGCCTGTAATATCTGCAGAGAGCGTTCGGTATGGGTTTAACATTCTACAGGGCATTCAAGATGAAAACAAGAGCACAAAAACATCACTCAAGGACGTAGTTACTGAGAATGAGTTTGAGAAAAAACTGCTTGGTGATGTTATTCCACCAACTGATATTGGGGTCTCATTTGATGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTAAAGGAATTGGTTATGCTTCCTCTTCAAAGGCCTGAATTGTTTTGCAAAGGACAACTAACTAAGCCTTGCAAGGGAATCTTACTTTTTGGCCCTCCTGGCACTGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCCGGAGCAAATTTTATTAACATTTCCATGTCTAGCATTACTTCAAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTTTCTCTTGCCAGCAAAATTGCTCCAAGCGTTATTTTTGTTGATGAGGTTGATAGTATGTTAGGGAGACGTGAAAATCCTAGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAAAAGATAGAGAGCGTGTGCTTGTTCTTGCTGCCACAAACAGACCTTTTGATCTAGATGAGGCTGTTATTAGGAGGCTTCCACGAAGATTGATGGTTAATTTGCCAGATGCAACAAACAGAGCGAAAATTATGAGAGTCATTTTAGCAAAAGAAGATTTGGCGCCCGATGTTGATTTAGAGGCATTAGCAAGTATGACTGATGGATACTCCGGAAGTGACCTAAAGAATCTGTGTGTCACAGCAGCACACTGTCCGATAAGAGAGATCTTGGTGAAGGAAAAGAAGGATAGAAGCTTTGCATTGGCTGAGAACAAACCTTTACCTGGTCTGTGTAGCAGTGCCGACATTCGTCCCTTGAAGATGGAAGATTTTAAATATGCACACGAGCAGGTGTGTGCAAGCGTGTCATCAGATTCGTCAAATATGAACGAACTACTCCAATGGAATGACCTCTACGGAGAAGGTGGATCAAGGAAAAAGACATCTTTGAGCTATTTCATGTAA 3687 0.4201 MVETRRSSSASKRSLSSPSSSSSPRSNTKRSKVSKDVSSTANPSPLVNESGEQKIRLSDLQETASLKAVGGETENQKSASVLVSPAQCLGGIAEKSNGLPPLARSKKRCIKSSPECAWGRLISQSSENPHLPIFEPIYTVGQCRQCNLWIKDPDVSTVLCKLSHIEHGGSSVALLEVIGSKGEVKVNGKIYGKKCRLILSGGDEVIFGFSSKQAYIFQQLHNNTSTANIPPPVSIFETQGAPIIGAQIEARPGDLSAVAGASILASFSNFNEDLSLISPPANTGTNTQQQTDASLLPAGNGDDKANVDVKHNTINNEPDGVYIEETGCPSSTTVTEDPKVDAVEVNVNVDADVGKMTAASSELRPLVCPDLDLSGKITKILEKNKELKERLKSVDTQNILASPKQQALKDSLQMKILNTENIDVSFESFPYFLSDITKNVLIASAYIHLKCNDSGKYVSDLPSLSPRILLSGPTGSEIYQETLSKALAKHFGAWLLIVDSLSLPGRTPSKEVEATKESSRPERPVFIKRSSAQAATLQHKKPTSGVDAQIIGGSAVSSQFILKQEVSTSSSKGITLKAGDRVKFVGDFPSTVSPPQVFLSRGPSYGYKGRVLIAFENNRSSKIGVRFEKPIPDGNDLGGLCESDHGFFCSANHLVLVDGSGGDDSSKVAINEIFEIASNLSKTGPLVLLIKDIEKGVPGNSEILKSKFGSLPQNVVVIGSHIQPDNRKEKTQPGSLLFTKFGGNQTALLDLAFPDNFTRLHDRSKETPKVMKQLNRLFPNKVTIQLPQDESLLADWKQQLDRDIETMKAQSNVASIRLVLNKFGLDCSDLETLCIKDETLTTESVEKIIGWAISYHFMHSSEVSTKESKPVISAESVRYGFNILQGIQDENKSTKTSLKDVVTENEFEKKLLGDVIPPTDIGVSFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPSEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDATNRAKIMRVILAKEDLAPDVDLEALASMTDGYSGSDLKNLCVTAAHCPIREILVKEKKDRSFALAENKPLPGLCSSADIRPLKMEDFKYAHEQVCASVSSDSSNMNELLQWNDLYGEGGSRKKTSLSYFM 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05285 1228 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 922 1098 - -
Vivi1g05285 1228 Gene3D - 1096 1190 - -
Vivi1g05285 1228 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 406 1227 - -
Vivi1g05285 1228 MobiDBLite consensus disorder prediction 278 302 - -
Vivi1g05285 1228 Gene3D - 117 227 - -
Vivi1g05285 1228 ProSitePatterns AAA-protein family signature. 1067 1086 IPR003960 GO:0005524|GO:0016887
Vivi1g05285 1228 SMART AAA_5 960 1097 IPR003593 GO:0016887
Vivi1g05285 1228 MobiDBLite consensus disorder prediction 1 51 - -
Vivi1g05285 1228 MobiDBLite consensus disorder prediction 1 53 - -
Vivi1g05285 1228 Coils Coil 377 397 - -
Vivi1g05285 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 923 1202 IPR027417 -
Vivi1g05285 1228 Pfam AAA+ lid domain 1117 1150 IPR041569 -
Vivi1g05285 1228 Pfam ATPase family associated with various cellular activities (AAA) 964 1093 IPR003959 GO:0005524|GO:0016887
Vivi1g05285 1228 CDD RecA-like_ATAD1 927 1093 - -
Vivi1g05285 1228 MobiDBLite consensus disorder prediction 278 296 - -
Vivi1g05285 1228 SUPERFAMILY SMAD/FHA domain 118 215 IPR008984 GO:0005515
Vivi1g05285 1228 Gene3D - 922 1201 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05285 Vivi-Chr1 115574422 115585974 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05285 959 1164 Calmodulin-binding Proteins AT3G56690 36.190 4.91e-31 130