Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05269 ATGAGTGATACCAAAGGCAAAAATCCAGACAGAGAACTCCTTAACTACCCCAACAACTTCACATCTGATGAAGATCATGATGTAATCAAAGAGCAAGACCGTTTGCTTCCTATAGCTAATGTTGGTCGCATCATGAAACAAATCTTGCCTCCAAATGCAAAAATCTCCAAAGAAGCTAAAGAAACCATGCAAGAGTGTGTCTCTGAGTTTGTCAGTTTTGTAACTGGTGAAGCTTCTGACAAGTGTCACAAAGAGAAACGCAAGACGGTGAACGGGGATGATGTTTGTTGGGCCATGGCTACTCTAGGGTTTGATGATTATGCTGAGCCTCTCAAAAGGTATTTGTATAAGTATAGGGAATTGGATGCGGAAAGAGGTAATAACCAAAATAAGGGTCATGAAATTGAAACATGTAATGATTATGATGGTAAGAAACAACAAAGTCCGAGGAAAGGTTCCTCTTCTTTGTTCAATAATAGGAACAGTGGTCCTCAGTCTAGGGGATTTTGA 510 0.4 MSDTKGKNPDRELLNYPNNFTSDEDHDVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDVCWAMATLGFDDYAEPLKRYLYKYRELDAERGNNQNKGHEIETCNDYDGKKQQSPRKGSSSLFNNRNSGPQSRGF 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05269 169 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g05269 169 FunFam Nuclear transcription factor Y subunit B-3 24 150 - -
Vivi1g05269 169 SUPERFAMILY Histone-fold 32 149 IPR009072 GO:0046982
Vivi1g05269 169 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 21 153 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vivi1g05269 169 MobiDBLite consensus disorder prediction 148 169 - -
Vivi1g05269 169 MobiDBLite consensus disorder prediction 123 147 - -
Vivi1g05269 169 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 35 99 IPR003958 -
Vivi1g05269 169 MobiDBLite consensus disorder prediction 123 169 - -
Vivi1g05269 169 Gene3D Histone, subunit A 24 161 IPR009072 GO:0046982
Vivi1g05269 169 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
Vivi1g05269 169 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Vivi1g05269 169 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05269 Vivi-Chr1 115318260 115319373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05269 24 132 CCAAT-HAP3 Transcription Factor Family AT2G47810 77.982 8.97e-62 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi1g05269 CBFD_NFYB_HMF 4.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05269 K08065 - qsa:O6P43_010740 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05269 1 115318260 115319373 Vivi1g05269 1 115318260 115319373 ECH
Vivi3g04787 3 89535612 89537524 Vivi1g05269 1 115318260 115319373 ECH
Vivi7g01650 7 74116946 74119169 Vivi1g05269 1 115318260 115319373 ECH
Vivi6g04239 6 142006021 142009997 Vivi1g05269 1 115318260 115319373 PCT