Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05268 ATGGAGGAAGGTCAAAGTAGTTCAAATTCCATACCTCATTTTCTCTCGAAGACTTATGAGATGGTTAGTGATCCTTCAACTGATGCCATTGTTTCATGGAGTTCTACCAATAAAAGTTTCATTGTTTGGAATCAACCTGATTTTTCGAAGGATTTGTTGCCCAAATTCTTTAAGCATAATAACTTCTCAAGCTTCATCAGACAACTTAACACCTATGGCTTTAGAAAAGTTGATCAAGAACAATGGGAATTTGCAAACGAAAACTTCGTAAGAGATCAACCACATCTTATGAATAATATCCACAGGCGCAAACCAGTTCATAGCCATTCTCTAAGTAATGCTCGTGACCAACGGGCGGCGGCCGTTGGTGCTAGTTCTGCTCCATTAACAGAATTAGAACGACATAATTTGGAAGTTGAGATAGAAAAACTTAAACAACACAAAGAACGACTACTTATGGAATTTCATATGCAAGAAGAGGGGTGGGAACATAATAAGATGCAATTATATTACTCAAATGATAGTTTGCAAAAGTTGGAACTGAATCAACAAAGTATGCTTTCTTCGGTTTGTCAAGTGCTGCAAAAATCCAAGGAAGAGGTAGGTTTCCTTCCGGTAACGGTAAACACAGGGAAAAAACGAAGTTATCTGAGAAATAGTCCCTTTAATAATTTACCTAGCATTGAAATTCCTTTGAAAAATTCTGAAATGTCACATAGAGAAAATGCCGAGAGTATGTATGTTCTCTCTATAAACATGGAACGATTGGATCTACTCGACTCATCATTGACGTTTTGGGAGAATATTGTAAATGATGTTAGTAACACATATTTTCAAACTCATTCGAACTTAAACTTTGATGATTTTATGAATTATGGACATTGTCCAATGATGTCTAATGTTCAACAAGAATCTGGAGTTCATCTCGAGTCACAAGGAAACATCTTGAACTCTCTACAAGATTTAGCCATTATTCTTGATCTCGATCCTAATGGAGATGATCCAGGTGATATATTTGTTCACAATCCTATTGCACCAGAGCCAGGTGTTATCGCCGTTTCTGATTCTGTTGCACTTGAGCCAACTATTATTGATGTTCCTAACTCCGTTGCCCCGAAAGAACAACTTGTCGATCCTATTGGACATGAGCCAAGTGATATCTTTGTTCATGATCCTATTGCACCAGAGCCAGGTGTTATCATCGTTTCTGATTCTGTTGCACCTAAGCCAACTGTTATTGATGTTCCTAACTCCGTTGAACCGAAAGAACAACTTGTCGAAATAGCACCGGTTACTACTGAATATAATTCACCATTTTGGAAAAAATACTTGGTGGAAAATCCTGATTTAGATGAATCAGAAAATCTAAGTGAAATTAGCAAATATTGTTGGAGTCGTAAGAATTAA 1407 0.3696 MEEGQSSSNSIPHFLSKTYEMVSDPSTDAIVSWSSTNKSFIVWNQPDFSKDLLPKFFKHNNFSSFIRQLNTYGFRKVDQEQWEFANENFVRDQPHLMNNIHRRKPVHSHSLSNARDQRAAAVGASSAPLTELERHNLEVEIEKLKQHKERLLMEFHMQEEGWEHNKMQLYYSNDSLQKLELNQQSMLSSVCQVLQKSKEEVGFLPVTVNTGKKRSYLRNSPFNNLPSIEIPLKNSEMSHRENAESMYVLSINMERLDLLDSSLTFWENIVNDVSNTYFQTHSNLNFDDFMNYGHCPMMSNVQQESGVHLESQGNILNSLQDLAIILDLDPNGDDPGDIFVHNPIAPEPGVIAVSDSVALEPTIIDVPNSVAPKEQLVDPIGHEPSDIFVHDPIAPEPGVIIVSDSVAPKPTVIDVPNSVEPKEQLVEIAPVTTEYNSPFWKKYLVENPDLDESENLSEISKYCWSRKN 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05268 468 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g05268 468 FunFam Heat shock transcription factor 1 7 104 - -
Vivi1g05268 468 Gene3D - 6 104 IPR036388 -
Vivi1g05268 468 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Vivi1g05268 468 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g05268 468 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g05268 468 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g05268 468 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi1g05268 468 Coils Coil 134 154 - -
Vivi1g05268 468 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 231 IPR027725 -
Vivi1g05268 468 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05268 Vivi-Chr1 115165914 115168540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05268 7 302 HSF AT4G18880 47.492 2.42e-70 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi1g05268 HSF_DNA-bind 2.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05268 K09419 - gmx:100820566 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05268 1 115165914 115168540 Vivi1g05268 1 115165914 115168540 ECH