Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05265 ATGGACTTGTACGGTCGGAGCCCCACTAGAAATGGATCCAACCCGCTTAGTCAACATGAATGGCGTTCACCGACCGCTGAAGCTGCTCTCGGAGAGTCGATGTGGCATTTGACGCTTGGTGGTAGTGGTGGTGGTGAATCTTACCCGGAGAGACATGGTGTGCCTAATTGTGCTTATTATATGAGGACTGGGTTTTGTGGATATGGTGGGAGGTGTCGATTCAATCACCCGCGTGATCGTGCTGCGGTTGCTGCTGCTGTTAGAGCTACAGGGGACTACCCAGAACGGCTTGGGGAACCTCCTTGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCGTCCTGTAAATTCCACCATCCCAAAAATGGAGGGGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATACCCATTACGTCCGGGTGAGAATGAGTGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGCGTAACTTGTAAATTCCACCATCCTCAACCTGCAGGAACGTCATTGCCAACATCTGCACCTCAATTTTATCAACAGGTGCAATCTCCAACTGTTCCTCTGCCCGAACAGTATGGTGGAGCTTCCACAAGCTTGAGAGTGGCTAGACCTCCTGTGTTACCCGGTTCATATGTACAGGGGGCTTATGGTCCTGTACTTCTTTCACCAGGGGTTGTTCCGTTTCCTGGATGGAGTCCTTATTCGGCTCCTGTAAGTCCCGTGTTATCTCCTGGTGCACAACCTGCTGTCGGGGGTACTTCTCTATACGGAGTGACCCAGTTGTCGTCATCAACATCAGCTTTTGCAAGACCTTATACTCCTTTGCCCTCTTCTCCCGGTCCTGCAGGAAGCAGTCTGCAGGAGAAAATATTTCCTGAAAGACCCGGTGAACCGCTCTGCCAATACTTTCTGAGAAACGGGGACTGTAAATTTGGATTGGCTTGTCGATATCATCATCCACAGGAACTCGTTGCTGCACGGCCAGTTCTTAGCCCCGTTGGTCTTCCTTTACGCCCGGGTGTACAGCCTTGTTCATTTTATTTACAAAATGGGCACTGCAAGTTTGGCTCGACATGCAAGTTTGATCATCCCGTGGCTGTGGGGTCAATGAGATACAGTCCATCAGCATCTTCTCTTATAGATGTTCCAGTTGCTCCGTACCCAGTCGCGTCTTTACTGTCTAACCTGGTGGTTCCTTCAACAACACCTTCAGAGTTTCGGCCTGAACTGAAGCCAGGGCCCAAAAAGGAATCATCAATTTCATCCAGAATGCATTCTTCTGGAACTTCTGTCGGTTTAATTTTCTCACAAGGCGGGTCTGTCTCGCTGTCTGATGCGCATCTCTCAAGCCAGAGTTCGGTTTCTTTGAACGGTAGCAGAAGCAGCAGACAGAGTGGCGACATACATTGA 1425 0.4891 MDLYGRSPTRNGSNPLSQHEWRSPTAEAALGESMWHLTLGGSGGGESYPERHGVPNCAYYMRTGFCGYGGRCRFNHPRDRAAVAAAVRATGDYPERLGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPGENECSYYLKTGQCKFGVTCKFHHPQPAGTSLPTSAPQFYQQVQSPTVPLPEQYGGASTSLRVARPPVLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGGTSLYGVTQLSSSTSAFARPYTPLPSSPGPAGSSLQEKIFPERPGEPLCQYFLRNGDCKFGLACRYHHPQELVAARPVLSPVGLPLRPGVQPCSFYLQNGHCKFGSTCKFDHPVAVGSMRYSPSASSLIDVPVAPYPVASLLSNLVVPSTTPSEFRPELKPGPKKESSISSRMHSSGTSVGLIFSQGGSVSLSDAHLSSQSSVSLNGSRSSRQSGDIH 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05265 474 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Vivi1g05265 474 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Vivi1g05265 474 SMART c3hfinal6 343 370 IPR000571 GO:0046872
Vivi1g05265 474 SMART c3hfinal6 96 123 IPR000571 GO:0046872
Vivi1g05265 474 SMART c3hfinal6 142 169 IPR000571 GO:0046872
Vivi1g05265 474 SMART c3hfinal6 51 78 IPR000571 GO:0046872
Vivi1g05265 474 PANTHER PROTEIN PHOSPHATASE RELATED 32 383 - -
Vivi1g05265 474 ProSiteProfiles Zinc finger C3H1-type profile. 343 371 IPR000571 GO:0046872
Vivi1g05265 474 SUPERFAMILY CCCH zinc finger 54 80 IPR036855 GO:0046872
Vivi1g05265 474 MobiDBLite consensus disorder prediction 448 474 - -
Vivi1g05265 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 123 IPR000571 GO:0046872
Vivi1g05265 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 78 IPR000571 GO:0046872
Vivi1g05265 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 345 369 IPR000571 GO:0046872
Vivi1g05265 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 326 IPR000571 GO:0046872
Vivi1g05265 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 169 IPR000571 GO:0046872
Vivi1g05265 474 SUPERFAMILY CCCH zinc finger 99 124 IPR036855 GO:0046872
Vivi1g05265 474 ProSiteProfiles Zinc finger C3H1-type profile. 51 79 IPR000571 GO:0046872
Vivi1g05265 474 ProSiteProfiles Zinc finger C3H1-type profile. 142 170 IPR000571 GO:0046872
Vivi1g05265 474 SUPERFAMILY CCCH zinc finger 345 370 IPR036855 GO:0046872
Vivi1g05265 474 SUPERFAMILY CCCH zinc finger 145 170 IPR036855 GO:0046872
Vivi1g05265 474 MobiDBLite consensus disorder prediction 405 431 - -
Vivi1g05265 474 ProSiteProfiles Zinc finger C3H1-type profile. 96 124 IPR000571 GO:0046872
Vivi1g05265 474 MobiDBLite consensus disorder prediction 7 21 - -
Vivi1g05265 474 Gene3D - 298 381 - -
Vivi1g05265 474 Gene3D - 46 92 - -
Vivi1g05265 474 Gene3D - 95 179 - -
Vivi1g05265 474 MobiDBLite consensus disorder prediction 1 23 - -
Vivi1g05265 474 SUPERFAMILY CCCH zinc finger 302 327 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05265 Vivi-Chr1 115059874 115063946 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05265 19 393 C2H2 Transcription Factor Family AT5G18550 53.571 3.64e-128 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g05265 zf-CCCH 2.8e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05265 - - lja:Lj5g3v1665190.1 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05265 1 115059874 115063946 Vivi1g05265 1 115059874 115063946 ECH