Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05261 ATGGATGAGATTTCGTCTTCCACAAATGTCACTCAAGATGTTGGTTCAATCTCCGATGAAAATAAAGAATCGTGGCAACATTTTGTCTTCCACGACCTTTCATCAATCAAGGATTTCTATGCTAAATACGCTCATGAAAAGGGATTTAGCGTGAGAAGAAATTTGCACTCCTTCTTTGATTCTCGTAACAAAAAAACGGACATTGTTCAATATATCCGTTATGTTTGTAACAAGCATGGTTTCAAGCACGGAAGTCGGGCGGATCCTAAGAACAAGACAAACTCGGATACTCCTGTTCTCATTGAATATCACAAAGAGAAAGAACTTCCCAAGGAAAGGATTGGTTGCCCAGCTAGTATTTCGTTGAAGTATGATTCCAATGTTAAAGGTTATCACATATACAAATGGAATGTTACTCATAACCACCCTCTCCATAAACCCGAGCATTCGCATTACTTGAGATCGGCTCGAGAGATTAGTGAGCCTAAAAAACAACTTGCTATAGTAAATTCAAAATCAGGCATGTCTGTAAGATCCTCCTTTCAAGTTATGCGTCAAATACCTGGTGGTTCAAAGAACCTTGGGTATTGCTTCCAAGATTTAAAGAACTTTCTCACCACTGTTCGACAAAAGGAAATGGTCATTGGTGATGCAACTATTATCCAAGAATATCTTAGAAACGAAGCTTTGAGGAACCCATCATTTTATTATGATATCCAAGTAGATTCTGAAGAGAACATAGCTAGTATTTTCTGGTCAGATGCAATCATGCAGCAAGACTATGAATTATTTGGTGATCTCATCAGTTTCGACACAACTTATCGAACAAATACGGAGTATCGCCCATTAGACCAAGCTTCTGCTTTGATGAAGTCAGTTCCAAACATCTTTCCCGATGTCTTCCATGGGTTGTGTTCTTGGCACATGGGGGAGAATGCAAAGTCCAACTTAGGCTCTCGTTGCAATGGTGCATTTCTTGACGAACTACATCACTTGGTTTCGAATGTTGATGATGAGGCAGAGTTTGACTTCAATTGGAATAAGATGCTTCAAAATTGTTTTGGTGGTAAAGCCACTTCTGAATTTACTTGGCTTGTCCAGATTCATCATAATCGTACTCAATGGTCTTCTGCTTGGGTGAAATCACACTTCACTGCCGGTTTGAAGACCACACAGTTAAGCGAGTCGTTCAATGCCTTTCTTCGCCACTTTCTTCAGCCAGACCACTCACTTGTGCAATTCTTTATCCATTTCAATGTTATGGTTGAGAAAATGCGAGATAATCATGCTGATTGTGATTTCAAGGCTGCCAATACTAGGCCAAGAAACAATTATCCCAACAGCCAACTCATGAGGTCTGTTGTCGCCAAGTATACTCCAGCATCGTTTGCATTCATTCACAAGCAATATGATCTTTCTTTCAAATATTATTATGAGGAGGACACATCAAGAAGTTCAATTTCTAATAGAGTTTTCAAAGTGTTCACAATTCAACTTGTTCGTGATGTCGATGAGATGGATTTTGATAATGATGCCGCTGCGAATGTTTATATGTCGGTCGAAGAAGTTCCAGAAAACCTTCTTCCTAATGATCAAGATCCTTTGCGACTTGATGAGAGGGTTGCTACTGTAGATATTGGGAACAAGATTTTTACTTGTACATGTCGTATGTTCGAGAACCGGGGATTCTTATGTCGCCATGTTTTCAAGATATTAGACTTCTTAGGGAGTTCTGTCCAATACCAGTCCTTGAAGTCCATACCTGACCAATACATATTGAAGCATTGGACTAAAGGAATTCGTCCATCCCTTGATGCTTTAAAACCCATCAGTATTGGAGGTATTTAA 1848 0.3939 MDEISSSTNVTQDVGSISDENKESWQHFVFHDLSSIKDFYAKYAHEKGFSVRRNLHSFFDSRNKKTDIVQYIRYVCNKHGFKHGSRADPKNKTNSDTPVLIEYHKEKELPKERIGCPASISLKYDSNVKGYHIYKWNVTHNHPLHKPEHSHYLRSAREISEPKKQLAIVNSKSGMSVRSSFQVMRQIPGGSKNLGYCFQDLKNFLTTVRQKEMVIGDATIIQEYLRNEALRNPSFYYDIQVDSEENIASIFWSDAIMQQDYELFGDLISFDTTYRTNTEYRPLDQASALMKSVPNIFPDVFHGLCSWHMGENAKSNLGSRCNGAFLDELHHLVSNVDDEAEFDFNWNKMLQNCFGGKATSEFTWLVQIHHNRTQWSSAWVKSHFTAGLKTTQLSESFNAFLRHFLQPDHSLVQFFIHFNVMVEKMRDNHADCDFKAANTRPRNNYPNSQLMRSVVAKYTPASFAFIHKQYDLSFKYYYEEDTSRSSISNRVFKVFTIQLVRDVDEMDFDNDAAANVYMSVEEVPENLLPNDQDPLRLDERVATVDIGNKIFTCTCRMFENRGFLCRHVFKILDFLGSSVQYQSLKSIPDQYILKHWTKGIRPSLDALKPISIGGI 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05261 615 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 18 601 IPR031052 GO:0006355
Vivi1g05261 615 ProSiteProfiles Zinc finger SWIM-type profile. 542 576 IPR007527 GO:0008270
Vivi1g05261 615 SMART 26again6 551 578 IPR006564 GO:0008270
Vivi1g05261 615 Pfam SWIM zinc finger 552 568 IPR007527 GO:0008270
Vivi1g05261 615 Pfam FAR1 DNA-binding domain 38 145 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05261 Vivi-Chr1 114763776 114765971 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi1g05261 FAR1 9.6e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05261 - - vvo:131652168 1271.14