Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05248 ATGCCTTCAATTTCGGATCTGTTTTCTATAGTAACAGACCGCTCTCGTTATTCACATCACAGAGAAAGATGGCTTGTCGGCAGTTATGGGCTTCAAGAGCTGCATCATACCTCAGGATCTCTGTCTTTCACAGAAGCTTCTCTTATGCTTCACACACTTTTTTCATCCGGTTTGGTCCATAACAATGTTATTGAATTTGAGACACTATTTGGAATTTTAACTGTCAAAAAGATCCCTTCGACCGATGCTACCGGTACACCGAACTCGCAGAATGGTGATTCCAAGGACAAAGGAAGGAAGTTTGTTGAAACTATTGAGCTTCAAATTGGCCTCAAGAACTACGATCCACAAAAGGATAAACGTTTCAGCGGCTCCGTCAAGTTGCCTCACATCCCTCGCCCTAAGATGAAGATTTGTATGCTTGGAGATGCCCAACACGTTGAAGAGGCAGAGAAAATTGGTTTGGAGTCAATGGATGTTGAAGCTTTGAAGAAGCTCAACAAGAATAAGAAGTTGGTGAAGAAACTTGCCAAGAAGCACCATGCCTTCTTAGCTTCTGAGTCTGTCATTAAACAGATTCCCCGTCTCTTGGGTCCTGGTCTCAACAAAGCAGGCATGTTTTTATCCCCTGGCTTAGGATTTTGGATATTTTGA 654 0.4281 MPSISDLFSIVTDRSRYSHHRERWLVGSYGLQELHHTSGSLSFTEASLMLHTLFSSGLVHNNVIEFETLFGILTVKKIPSTDATGTPNSQNGDSKDKGRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKHHAFLASESVIKQIPRLLGPGLNKAGMFLSPGLGFWIF 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05248 217 Gene3D - 96 138 - -
Vivi1g05248 217 Gene3D - 139 207 IPR016095 -
Vivi1g05248 217 FunFam Ribosomal protein 139 211 - -
Vivi1g05248 217 CDD Ribosomal_L1 95 210 IPR028364 -
Vivi1g05248 217 Pfam Ribosomal protein L1p/L10e family 98 205 IPR028364 -
Vivi1g05248 217 FunFam Ribosomal protein L10a 83 193 - -
Vivi1g05248 217 SUPERFAMILY Ribosomal protein L1 97 209 IPR023674 -
Vivi1g05248 217 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 91 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05248 Vivi-Chr1 114223901 114225603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05248 92 207 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 91.379 6.50e-59 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05248 K02865 - osa:9266191 189.119