Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05212 ATGGCCAAGGAAAAGGTGGATTCACCTGTTACAGTTCTTGAGGACTATTTCAAAAGTTCAGATTCTGAAACAAGTTCTTCCAAAGAACCTACTTTGGATTCTGATGACATTTCAAAACCTCTTTCAAGGTGGCATTCTTTTCTTCAATTGCTCAAAACAGGATCCAAGAAACCGTTACCAACATTGCAGCCACCTCTTCATGGACAACTCTCAAGGAGAATGAGCAGAAGCAGAAGCATGAGAGATACCATTCTTCCAAGTTGTCTCACTCTCTCCAATGCAACTTCAACCCCTTGTAGATCACCATGGAAGATTTTTTCTCATCATGATATTCAACTTGCAACCAACTATTTCAGCCAAGAAAATTTGATTGGAAAAGGTGGATATGCTGAGGTTTACAAAGGGTGTTTACCAAATCATCGGCTAGTAGCAATCAAACGGTTAACAAGAGGAACTGCTGATGAAATTATAGGAGATTTTTTATCAGAACTTGGTGTCATGGCGCATGTTAATCATCCCAATACTGCTAAGCTTGTTGGCTATGGAGTGGATGGAGGAATGTATCTAGTTCTTGAATTGTCTGAAAAAGGGAGTCTAGCTTCAGTGCTATATGGTTCCAAGGAGAAAGTTCCATGGTGTATTAGGCACAAAATTGCATTAGGAACAGCCAATGGTATATTATATCTTCATGAGGGTTGTCAAAAAAGATTTATCCATAGAGATATAAAAGCTGCCAATATCTTGCTCACAGAAGATTTTGAGCCTCAGATTTGTGATTTTGGGCTAGCAAAATGGCTGCCAGAGAATTGGACTCATCATAACGTTTCAAAATTCGAAGGAACTTTTGGTTACCTTGCTCCTGAGTATTTGCTTCATGGCATAGTAGATGAGAAAACAGATGTATTTGCCTTTGGTGTATTGCTCTTAGAATTGGTCAGTGGGAGAAGAGCACTTGATTATTCACAACAAAGCCTTGTTTTGTGGGCAAAACCTTTGTTGAAAAAGAATGATGTTATGGAGCTGATAGATCCTTCACTAGCAGGTGAATTCGACTATAGGCAGATGAATCTTATGCTCTTGACAGCTTCGTTATGCATACAACAGTCCTCTATTCGCCGTCCCTCTATGAGACAGGTTGTACAGCTTCTGAATGGAAACCTTAGTTGCTTCAAAACCATGAAGAAAACTCGACTGCCATTCTTCCGAAGAGTCTTTCGGGAAGAGCTTCTTGATTCTGATTAG 1242 0.3977 MAKEKVDSPVTVLEDYFKSSDSETSSSKEPTLDSDDISKPLSRWHSFLQLLKTGSKKPLPTLQPPLHGQLSRRMSRSRSMRDTILPSCLTLSNATSTPCRSPWKIFSHHDIQLATNYFSQENLIGKGGYAEVYKGCLPNHRLVAIKRLTRGTADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKVPWCIRHKIALGTANGILYLHEGCQKRFIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHNVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDVMELIDPSLAGEFDYRQMNLMLLTASLCIQQSSIRRPSMRQVVQLLNGNLSCFKTMKKTRLPFFRRVFREELLDSD 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05212 413 Gene3D Transferase(Phosphotransferase) domain 1 195 397 - -
Vivi1g05212 413 Gene3D Phosphorylase Kinase; domain 1 87 192 - -
Vivi1g05212 413 SMART serkin_6 118 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05212 413 MobiDBLite consensus disorder prediction 17 39 - -
Vivi1g05212 413 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 89 192 - -
Vivi1g05212 413 ProSiteProfiles Protein kinase domain profile. 118 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05212 413 PANTHER OS08G0249100 PROTEIN 7 411 IPR046958 -
Vivi1g05212 413 ProSitePatterns Protein kinases ATP-binding region signature. 124 146 IPR017441 GO:0005524
Vivi1g05212 413 MobiDBLite consensus disorder prediction 55 76 - -
Vivi1g05212 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Vivi1g05212 413 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 195 397 - -
Vivi1g05212 413 SUPERFAMILY Protein kinase-like (PK-like) 95 383 IPR011009 -
Vivi1g05212 413 Pfam Protein kinase domain 119 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05212 Vivi-Chr1 113195787 113198836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05212 106 385 Receptor kinase-like Gene Family AT1G53420 40.972 4.97e-66 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vivi1g05212 Pkinase 5.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05212 - - gmx:100780587 702.205