Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05192 ATGGCCAAGGAAAAGGTGGATTCACCTGTTACAGTTCTTGAGGACTATTTCAAAAGTTCAGATTCAGAAACAAGTTCTTCCAAAGAACCTACTTTGGATTCTGATGACATTTCAAAACCTCTTTCAAGGTGGCATTCTTTTCTTCAATTGCTCAAAACAGGATCCAAGAAACCGTTACCAACATTGCAGCCACCTCTTCATGGACAACTCTCAAGGAGAATGAGCAGAAGCAGAAGCATGAGAGATAGTATTCTTCCAAGTTGTCTCACTCTCTCCAATGCAACTTCAACCCCTTGTAGATCACCATGGAAGATTTTTTCTCATCATGATATACAACTTGCAACCAACTATTTCAGCCAAGAAAATTTGATAGGAAAAGGTGGATATGCTGAGGTTTACAAAGGATGTTTACCAAATCATCGGTTAGTAGCAATCAAACGGTTAACAAGGGGAACTGCTGATGAAATTATAGGAGATTTTTTATCAGAACTTGGTGTAATGGCGCATGTTAATCATCCCAATACTGCTAAGCTTGTTGGCTATGGAGTGGATGGAGGAATGTATCTAGTTCTTGAATTGTCTGAAAAAGGAAGTCTAGCTTCAGTGCTATATGGTTCCAAGGAGAAAGTACCATGGTGTATTAGGCCCAAAATTGCATTAGGAACAGCCAATGGTATATTGTATCTTCATGAGGGTTGTCAAAAAAGATTTATCCATAGAGATATAAAAGCTGCCAATATCTTGCTCACAGAAGATTTTGAGCCTCAGATTTGTGATTTTGGGCTAGCAAAATGGCTGCCAGAGAATTGGACTCATCATAACGTTTCAAAATTTGAAGGAACTTTTGGTTACCTTGCTCCTGAGTATTTGCTTCATGGCATAGTAGATGAGAAAACAGATGTATTTGCCTTTGGTGTATTGCTCTTAGAATTGGTCAGTGGGAGAAGAGCACTTGATTATTCACAACAAAGCCTTGTTTTGTGGGCAAAACCTTTGTTGAAAAAGAATGATATTATGGAGCTGATAGATCCTTCACTAGCAGGCGAATTCGAGTATAGGGAGATGAATCTTATGCTCTTGACAGCTTCGTTATGCATACAACAGTCCTCTATTCGCCGTCCCTCTATGAGACAGGTTGTGCAGCTTCTGAATGGAAACCTTAGTTGCTTCAAAACCATGAAGAAAACTCGACTGCCATTCTTCCGAAGAGTCTTTCGGGAAGAGCTTCTTGATTCTGATTAG 1242 0.3961 MAKEKVDSPVTVLEDYFKSSDSETSSSKEPTLDSDDISKPLSRWHSFLQLLKTGSKKPLPTLQPPLHGQLSRRMSRSRSMRDSILPSCLTLSNATSTPCRSPWKIFSHHDIQLATNYFSQENLIGKGGYAEVYKGCLPNHRLVAIKRLTRGTADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKVPWCIRPKIALGTANGILYLHEGCQKRFIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHNVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIMELIDPSLAGEFEYREMNLMLLTASLCIQQSSIRRPSMRQVVQLLNGNLSCFKTMKKTRLPFFRRVFREELLDSD 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05192 413 Gene3D Phosphorylase Kinase; domain 1 87 192 - -
Vivi1g05192 413 SMART serkin_6 118 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05192 413 PANTHER OS08G0249100 PROTEIN 7 411 IPR046958 -
Vivi1g05192 413 MobiDBLite consensus disorder prediction 17 39 - -
Vivi1g05192 413 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 89 192 - -
Vivi1g05192 413 MobiDBLite consensus disorder prediction 55 78 - -
Vivi1g05192 413 Gene3D Transferase(Phosphotransferase) domain 1 195 397 - -
Vivi1g05192 413 Pfam Protein kinase domain 119 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05192 413 ProSitePatterns Protein kinases ATP-binding region signature. 124 146 IPR017441 GO:0005524
Vivi1g05192 413 SUPERFAMILY Protein kinase-like (PK-like) 95 383 IPR011009 -
Vivi1g05192 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Vivi1g05192 413 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 195 397 - -
Vivi1g05192 413 ProSiteProfiles Protein kinase domain profile. 118 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05192 Vivi-Chr1 112757172 112760400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05192 105 379 Trihelix Transcription Factor Family AT1G68690 41.958 9.26e-67 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vivi1g05192 Pkinase 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05192 - - gmx:100780587 697.197