Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05191 ATGAACATCTTCATCCTCTTCTTCGCCACCATACTAACAACTCTCCCCCACCCTTCTCTCTCCGCCACGTGTCCTCTCAACTTCACCATCCTAACAGTCCTCACCGGCGCCGCCACAACACCACCGTCCTCCTTCACGTCAACTCCCTGTCAATTCGTCCACCAAGCCCTCCGTCTCGTCCAATCCGACTACCTCGGCCGCACCGACTTCTTCCTCCCTCCCTTAAACTCCGCCGCCCCATGCTGGGACTCTTTCCAATCCTTCATCAACCAGTTCGCTCCGAATTTCAATATTCGTTCCTCTTGCGGCTTCCAAACCAATTGGATCTCACAAGGTTGCATCAACGTCACTACAAAACAACAATTCGAATCAATCGTTCCTCAATCCGCAATTCTCAAAATGAAAACAAGTTGTAACCAATCACTTGAAGATAATTCTCCTTGTGCTCTTTGTACAAGTAGTTTATCTGGTTTGCCATCTCTTGGTCAATCCATAGGTAACCTTTCTGATTGCACTGGCTACCCTTCAATCTACGCTGCTGTTTTTTCAAATCAATTTGGACCGTCCGATCCTGGTACTGCTAAGTGTTTATTTGCTCTTGATTTCACCTCTGGAAGTTCTTCTGGTAATAAGAAAAAGGTTATTATTATTGTTGTTGTTTCAGTTGTTTCTGCTTTGGTTCTTTTGTTGATAGTTATAGGGGTTTGGGCTTATTGGAAATTTAATGATAAGGAAATTGAGGATGGTAAGGATTATGGTGCTAATATCGGTGAGGCGGGTTCGGCTTCTGGGTTGGAAACAATGGATCATAGTACTACTTTAACTAGATTCACTGTTGACGATATTAAGAAGGCGACGAAGAATTTTCATAGAGATAATATAATTGGGAAAGGGGGTTATGGGAATGTGTATAAAGGACTATTGTCTGATGGAAGTGAAGTTGCTTTCAAGAGGTTTAAGAATTGTTCTGCTGCTGGGGATGCTAGTTTCACTCACGAGGTTCAAGTTATTGCTAGTGTTAGGCATGTGAATCTTGTGGCTTTGAGAGGCTATTGTAGTGCGACGACGCGTTTAGAGGGTTATCAGAGGATTATTGTTTGTGATTTGATGAAAAATGGGAGTCTTCATGATCATTTGTTTGGTTCTAATGGGGCGAAACTTACTTGGCCGGTTCGTCAGAAGATTGCGCTTGGAACTGCTAGGGGATTAGCTTATTTGCATTACGGAGCTCAACCTGCTATCATTCATAGGGATATTAAAGCGAATAATATACTTTTGGATGATAAGTTTGAAGCTAAAGTTGCTGATTTTGGACTTGCGAAGTTTAATCCTGAAGGAATGACTCATATGAGTACAAGGGTGGCCGGAACTATGGGATATGTTGCTCCTGAGTACGCTCTGTATGGACAATTAACAGAAAGGAGTGATGTGTTTAGTTTTGGTGTTGTGCTTCTTGAGTTATTGAGTGGGCGAAAGGCTCTTCAAACAGATGATGATGGACATCCTTCTGCTTTGACTGATTGGGCTTGGTCGTTGGTTAGAACGGGAAAGGCGTTGGATGTTATTGAAGATGGGATGCCAGAACAAGGTTCAAATCAAGTTCTTGAAAAGTATGTGTTGATTGCTGTGCTTTGTTCTCATCCACAGTTATATGCTAGGCCAACAATGGACCAGGTTGTTAAAATGATGGAGACTGATGATGAACTAGTTCCATCGATACCTGGACGGCCGATTCCTCTTGTTGCTGCGAGACTTGATATTGAGAGATCTATAAGCAGTAGCGGCGGCTCGGGTCAGCTATCTAGTCCAACAGGTTATCAATCGTTCACTTTAGAAATGGGAAGTGAACGCTATTCTTCTAGTCATTTAAGGGAAGAAAGAAGCTCAGCCTCTAGGATTTTGAGTTCGGATTTGGATGAGTGA 1923 0.4301 MNIFILFFATILTTLPHPSLSATCPLNFTILTVLTGAATTPPSSFTSTPCQFVHQALRLVQSDYLGRTDFFLPPLNSAAPCWDSFQSFINQFAPNFNIRSSCGFQTNWISQGCINVTTKQQFESIVPQSAILKMKTSCNQSLEDNSPCALCTSSLSGLPSLGQSIGNLSDCTGYPSIYAAVFSNQFGPSDPGTAKCLFALDFTSGSSSGNKKKVIIIVVVSVVSALVLLLIVIGVWAYWKFNDKEIEDGKDYGANIGEAGSASGLETMDHSTTLTRFTVDDIKKATKNFHRDNIIGKGGYGNVYKGLLSDGSEVAFKRFKNCSAAGDASFTHEVQVIASVRHVNLVALRGYCSATTRLEGYQRIIVCDLMKNGSLHDHLFGSNGAKLTWPVRQKIALGTARGLAYLHYGAQPAIIHRDIKANNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQTDDDGHPSALTDWAWSLVRTGKALDVIEDGMPEQGSNQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETDDELVPSIPGRPIPLVAARLDIERSISSSGGSGQLSSPTGYQSFTLEMGSERYSSSHLREERSSASRILSSDLDE 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05191 640 MobiDBLite consensus disorder prediction 617 640 - -
Vivi1g05191 640 Gene3D Transferase(Phosphotransferase) domain 1 370 570 - -
Vivi1g05191 640 MobiDBLite consensus disorder prediction 618 640 - -
Vivi1g05191 640 CDD STKc_IRAK 295 564 - -
Vivi1g05191 640 Gene3D Phosphorylase Kinase; domain 1 257 368 - -
Vivi1g05191 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Vivi1g05191 640 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 253 368 - -
Vivi1g05191 640 ProSiteProfiles Protein kinase domain profile. 289 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05191 640 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 370 572 - -
Vivi1g05191 640 Pfam SPARK 21 160 IPR043891 -
Vivi1g05191 640 SMART serkin_6 289 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05191 640 Pfam Protein kinase domain 289 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05191 640 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Vivi1g05191 640 SUPERFAMILY Protein kinase-like (PK-like) 272 575 IPR011009 -
Vivi1g05191 640 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 80 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05191 Vivi-Chr1 112731889 112734708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05191 21 611 Receptor kinase-like Gene Family AT2G48010 63.744 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vivi1g05191 Pkinase 5.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05191 - - gmx:100800760 906.746