Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05174 ATGGAAGAAAAAATAGTTGCATCTTCTGATAAAGAGGAATTAAAGCAAGTAAATAAAAGTTGTGATGATAGTTTAGTTGCAATTGTTGCTTGTGATGAAGATGAAGAACCTAGAACTGGAATGATATTTGGTTCCGAAGAAGATGTTACTCGATATTACACGAATTATGCTAAACGAATGGGTTTCGGAGTTGGAAAAATAAGTTCGAAAAATGGTGATGATGGAAGGAAATACTTTACTCTAGCATGTAATTGTGCGAGGAAGTATGTGAGCACTTCAAAGAATCCTTCAAAGCAATATCTTACCTCGAAAACACAATGTAGAGCTAGATTGAATGCGTGTATAGCTTTAGATGGAACGATTACTGTTTCAAGAGTTGTTCTTGAGCATAATCACGAACTTGGCCAAACCAAAGGACGGTATTTTATATTGGACGAGAATTTGGGGCCTCATGTAGAGAAGAATTTAGAACTTAACGATCAAGGTGCAGTCAATGTTAGCAGAAGTCTTCAATCTGTGGGTGTTGGAACGAATGGGTGTGAGAAATTTACTTTTGGAGAAAAGGATTGTAGAAACCATGTACACAAAGTAAGGCGGTTAAAACTTGGGAGAGGAGACGTTGATGCGATTCATAGCTTTTTTTTTAGAATGCAAAAGCTAAATAGTCAATTTTATTATGCAATTGATATGGATGATAAGAGGAATTTACAAAATTTATTTTGGGCAGATGCGAGGTGTAGGGCTGCATACGAGTATTTTGGTGAAGTCATAACTTTTGACACTACTTATTTTAGAAATAAGTATGACTTGCCATTGGCCCTTTTCGTTGGAGTGAACCATCATGGCCAGTCTATTTTGTTGGGTTGTGCAATATTATCGAACGTGGATACTAAAACTCTTACTTGGTTGTTCACAAGATGGTTGGAATGTATGCATGGACATGCTCCAAATGGCATAATTACCGATGATGATAAAGCAATGAAAAATGCAATTGAGGTTGCCTTTCCAAAAGCTCGTCATCGATGGTGCTTGTGGCATATAGTGAAAAAGGTCCCAGAAATGTTGAGTAAACACTCTTATTGTGAGTCTATCAAAACACTTATGCATGATGTGGTATATGATTCTCAAAGCAAAAGTGATTTCATGGAGAGGTGGGGAAATATGATAGAACATTATAAACTACATGATAATGAATGGCTAAAAGAGTTATTTGATGAGCGACATCGTTGGGTTCCTGTGTATGTGAAGGACACATTTTGGGCTGGAATGTCAACTACACAAAGGAGGGAAAATATAGAATCATTTTTTGATGGTTTCGTAAGTTCAAAGACAACGTTGAAGCAATTTGTTGAACAGTATGATGATGTATTGAATGATAAAATTGAAAAGGAAAGCATGACTGATTTTGATTCCTTTAACACAACAATTGCATGTGTAAGTCATTTTGGTTTTGAGGTCCAATTTCAGAAAGCATTTACCAATTCAAAATTCAAAGAATTTCAAGTAGAAGTTTCTTCTATGATGTATTGTAATACTAGTTTTGAGAGATTGGAGGACTTGAATTCAATATTCTCTGTTACTGAAAATAAGAAAGTAAATGAGAAAATTAAAGATATGGTGTTTAAGGTATCTTTCTATGAAAAAGACTTCAAATTACAGTGTACATGTTGCTTATTTGAGTTTAAAGGAATTTTATGTAGGCACATTCTTTGTGTGCTTAAGCTTATTGGTAAAACCGAGTCAGTGCCACCTTATTATATCTTGTCACGGTGGAGGAAGTATGTAAAGCGGAGATATACACTGATTAAACGTGGTTTTGAAGAATTGCAACGTGTTAATAAAGCATGTGATGCATTTTACGAAGTTGCTTCTACAAGCATAAACTCTGAAGCTGATTTACTGAAAATGATGAATTGGATCAAGGACTTGAAAAATGTATTAACTTGTAAAGGGCCGTCCTCCAGGATTACAGAAGAACATAGTTCAATTCCAAACCATGTAACTAGGATTTTTGACTCAGCAGTAACTCAAAGTAATGGGTGTCTTCCTTCCAAAAGGAAGACATCTGACATTGATCAAATTTTGGAGAAGAAGCTTGCAAGAAATAAAACTCAAAAGAACAACCAGGAAAACGAAAAGGATCAAAGTCAAGAAGAGTTTTGGATTTTTTTGTGGCAGGGCTTGTGTACACCTATTGTTCAAGAAGTTGAAGAACATCTTGGCGATATAGTCCAGGTTTTAAATTGTCCTCAAACCATAAGCCAGAATGGTTCCTCTTCTGAACTTGTGCGAGGCACAACACAATAG 2307 0.3567 MEEKIVASSDKEELKQVNKSCDDSLVAIVACDEDEEPRTGMIFGSEEDVTRYYTNYAKRMGFGVGKISSKNGDDGRKYFTLACNCARKYVSTSKNPSKQYLTSKTQCRARLNACIALDGTITVSRVVLEHNHELGQTKGRYFILDENLGPHVEKNLELNDQGAVNVSRSLQSVGVGTNGCEKFTFGEKDCRNHVHKVRRLKLGRGDVDAIHSFFFRMQKLNSQFYYAIDMDDKRNLQNLFWADARCRAAYEYFGEVITFDTTYFRNKYDLPLALFVGVNHHGQSILLGCAILSNVDTKTLTWLFTRWLECMHGHAPNGIITDDDKAMKNAIEVAFPKARHRWCLWHIVKKVPEMLSKHSYCESIKTLMHDVVYDSQSKSDFMERWGNMIEHYKLHDNEWLKELFDERHRWVPVYVKDTFWAGMSTTQRRENIESFFDGFVSSKTTLKQFVEQYDDVLNDKIEKESMTDFDSFNTTIACVSHFGFEVQFQKAFTNSKFKEFQVEVSSMMYCNTSFERLEDLNSIFSVTENKKVNEKIKDMVFKVSFYEKDFKLQCTCCLFEFKGILCRHILCVLKLIGKTESVPPYYILSRWRKYVKRRYTLIKRGFEELQRVNKACDAFYEVASTSINSEADLLKMMNWIKDLKNVLTCKGPSSRITEEHSSIPNHVTRIFDSAVTQSNGCLPSKRKTSDIDQILEKKLARNKTQKNNQENEKDQSQEEFWIFLWQGLCTPIVQEVEEHLGDIVQVLNCPQTISQNGSSSELVRGTTQ 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05174 768 ProSiteProfiles Zinc finger SWIM-type profile. 541 577 IPR007527 GO:0008270
Vivi1g05174 768 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 24 637 IPR031052 GO:0006355
Vivi1g05174 768 Pfam SWIM zinc finger 541 573 IPR007527 GO:0008270
Vivi1g05174 768 SMART 26again6 552 579 IPR006564 GO:0008270
Vivi1g05174 768 Pfam FAR1 DNA-binding domain 51 134 IPR004330 -
Vivi1g05174 768 Pfam MULE transposase domain 256 350 IPR018289 -
Vivi1g05174 768 Coils Coil 692 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05174 Vivi-Chr1 112483718 112489424 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi1g05174 MULE 7.6e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05174 - - vvo:131643882 1565.05