Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05172 ATGGAAGAAAAAATAGTTGCATCTTCTGATAAAGAGGAATTAAAGCAAGTAAATAAAAGTTGTGATGATAGTTTAGTTGCAATTGTTGCTTGTGATGAAGATGAAGAACCTAGAACTGGAATGATATTTGGTTCCGAAGAAGATGTTACTCGATATTACACGAATTATGCTAAACGAATGGGTTTCGGAGTTGGAAAAATAAGTTCGAAAAATGGTGATGATGGAAGGAAATACTTTACTCTAGCATGTAATTGTGCGAGGAAGTATGTGAGCACTTCAAAGAATCCTTCAAAGCAATATCTTACCTCGAAAACACAATGTAGAGCTAGATTGAATGCGTGTATAGCTTTAGATGGAACGATTACTGTTTCAAGAGTTGTTCTTGAGCATAATCACGAACTTGGCCAAACCAAAGGACGGTATTTTATATTGGACGAGAATTTGGGGCCTCATGTAGAGAAGAATTTAGAACTTAACGATCAAGGTGCAGTCAATGTTAGCAGAAGTCTTCAATCTGTGGGTGTTGGAACGAATGGGTGTGAGAAATTTACTTTTGGAGAAAAGGATTGTAGAAACCATGTACACAAAGTAAGGCGGTTAAAACTTGGGAGAGGAGACGTTGATGCGATTCATAGCTTTTTTTTTAGAATGCAAAAGCTAAATAGTCAATTTTATTATGCAATTGATATGGATGATAAGAGGAATTTACAAAATTTATTTTGGGCAGATGCGAGGTGTAGGGCTGCATACGAGTATTTTGGTGAAGTCATAACTTTTGACACTACTTATTTTAGAAATAAGTATGACTTGCCATTGGCCCTTTTCGTTGGAGTGAACCATCATGGCCAGTCTATTTTGTTGGGTTGTGCAATATTATCGAACGTGGATACTAAAACTCTTACTTGGTTGTTCACAAGATGGTTGGAATGTATGCATGGACATGCTCCAAATGGCATAATTACCGATGATGATAAAGCAATGAAAAATGCAATTGAGGTTGCCTTTCCAAAAGCTCGTCATCGATGGTGCTTGTGGCATATAGTGAAAAAGGTCCCAGAAATGTTGAGTAAACACTCTTATTGTGAGTCTATCAAAACACTTATGCATGATGTGGTATATGATTCTCAAAGCAAAAGTGATTTCATGGAGAGGTGGGGAAATATGATAGAACATTATAAACTACATGATAATGAATGGCTAAAAGAGTTATTTGATGAGCGACATCGTTGGGTTCCTGTGTATGTGAAGGACACATTTTGGGCTGGAATGTCAACTACACAAAGGAGGGAAAATATAGAATCATTTTTTGATGGTTTCGTAAGTTCAAAGACAACGTTGAAGCAATTTGTTGAACAGTATGATGATGTATTGAATGATAAAATTGAAAAGGAAAGCATGACTGATTTTGATTCCTTTAACACAACAATTGCATGTGTAAGTCATTTTGGTTTTGAGGTCCAATTTCAGAAAGCATTTACCAATTCAAAATTCAAAGAATTTCAAGTAGAAGTTTCTTCTATGATGTATTGTAATACTAGTTTTGAGAGATTGGAGGACTTGAATTCAATATTCTCTGTTACTGAAAATAAGAAAGTAAATGAGAAAATTAAAGATATGGTGTTTAAGGTATCTTTCTATGAAAAAGACTTCAAATTACAGTGTACATGTTGCTTATTTGAGTTTAAAGGAATTTTATGTAGGCACATTCTTTGTGTGCTTAAGCTTATTGGTAAAACCGAGTCAGTGCCACCTTATTATATCTTGTCACGGTGGAGGAAGTATGTAAAGCGGAGATATACACTGATTAAACGTGGTTTTGAAGAATTGCAACGTGTTAATAAAGCATGTGATGCATTTTACGAAGTTGCTTCTACAAGCATAAACTCTGAAGCTGATTTACTGAAAATGATGAATTGGATCAAGGACTTGAAAAATGTATTAACTTGTAAAGGGCCGTCCTCCAGGATTACAGAAGAACATAGTTCAATTCCAAACCATGTAACTAGGATTTTTGACTCAGCAGTAACTCAAAGTAATGGGTGTCTTCCTTCCAAAAGGAAGACATCTGACATTGATCAAATTTTGGAGAAGAAGCTTGCAAGAAATAAAACTCAAAAGAACAACCAGGAAAACGAAAAGGATCAAAGTCAAGAAGAGGGCTTGTGTACACCTATTGTTCAAGAAGTTGAAGAACATCTTGGCGATATAGTCCAGGTTTTAAATTGTCCTCAAACCATAAGCCAGAATGGTTCCTCTTCTGAACTTGTGCGAGGCACAACACAATAG 2286 0.357 MEEKIVASSDKEELKQVNKSCDDSLVAIVACDEDEEPRTGMIFGSEEDVTRYYTNYAKRMGFGVGKISSKNGDDGRKYFTLACNCARKYVSTSKNPSKQYLTSKTQCRARLNACIALDGTITVSRVVLEHNHELGQTKGRYFILDENLGPHVEKNLELNDQGAVNVSRSLQSVGVGTNGCEKFTFGEKDCRNHVHKVRRLKLGRGDVDAIHSFFFRMQKLNSQFYYAIDMDDKRNLQNLFWADARCRAAYEYFGEVITFDTTYFRNKYDLPLALFVGVNHHGQSILLGCAILSNVDTKTLTWLFTRWLECMHGHAPNGIITDDDKAMKNAIEVAFPKARHRWCLWHIVKKVPEMLSKHSYCESIKTLMHDVVYDSQSKSDFMERWGNMIEHYKLHDNEWLKELFDERHRWVPVYVKDTFWAGMSTTQRRENIESFFDGFVSSKTTLKQFVEQYDDVLNDKIEKESMTDFDSFNTTIACVSHFGFEVQFQKAFTNSKFKEFQVEVSSMMYCNTSFERLEDLNSIFSVTENKKVNEKIKDMVFKVSFYEKDFKLQCTCCLFEFKGILCRHILCVLKLIGKTESVPPYYILSRWRKYVKRRYTLIKRGFEELQRVNKACDAFYEVASTSINSEADLLKMMNWIKDLKNVLTCKGPSSRITEEHSSIPNHVTRIFDSAVTQSNGCLPSKRKTSDIDQILEKKLARNKTQKNNQENEKDQSQEEGLCTPIVQEVEEHLGDIVQVLNCPQTISQNGSSSELVRGTTQ 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05172 761 ProSiteProfiles Zinc finger SWIM-type profile. 541 577 IPR007527 GO:0008270
Vivi1g05172 761 SMART 26again6 552 579 IPR006564 GO:0008270
Vivi1g05172 761 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 24 637 IPR031052 GO:0006355
Vivi1g05172 761 Pfam SWIM zinc finger 541 573 IPR007527 GO:0008270
Vivi1g05172 761 Pfam MULE transposase domain 256 350 IPR018289 -
Vivi1g05172 761 Pfam FAR1 DNA-binding domain 51 134 IPR004330 -
Vivi1g05172 761 Coils Coil 692 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05172 Vivi-Chr1 112483718 112489424 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi1g05172 MULE 7.5e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05172 - - vvo:131643882 1540.01