Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05171 ATGGCGATGGTTCCTTGGCGTGGTATCAGTTGCTGTTTGAGTGCTGCTGCTCTTTACTTTCTCGGTAGAGCAAGTGGCAGGGATGCTGAAATTCTTAAATCTGTTAGCAGGGTTAATCAATTGAGGGAGCTAGCAAAACTGTTGGATGAGGAAATACTTCCCTTGGTTGTTGCGATTTCTGGAAGAGTTGGTTCTGAAACCCCTATTAATTGTGAATTTAGTGGTTTAAGAGGTGTAATGGTTGAAGAAACGGCTGAGCAACATTTTCTGAAGCACAATGAAAATGGTTCATGGATACAAGATTCTGCGTTAATGTTATCCATGAGTAAAGAGGTTCCTTGGTATCTGGGTGATGGAACTGATCGTGTGCGTGTAGTTGGAGCTCGTGGTGCCACTGGTTTTGTATTGCCTGTTGGAAGTGAGGCATTTGAAGAGTCGGGTCGGTCACTTGTACGTGGAACATTGGATTATCTCCAAGGTTTAAAGATGCTAGGAGTTAAGAGAATTGAACGGGTACTTCCCGTTGGAACTTCCTTGACTGTTGTTGGTGAGGCTGCTAAGGACGATGTCGGAACCATTCGAATTCAGCGACCCACCAAAGGGCCATTTTATGTCTCTCCCAAAACAATTGAGGAACTCATTGCAAATCTTGGGAAATGGGCGAGGTGGTATAAGTGTGCTTCCATGGGCTTGACAGTGTTTGGTGTGTATCTGATAGCCAATCATGCTATCCGGTACATCATGGAAAGACGCCATCGCAACGAAATACAAAAAAGGGTTCTTGCTGCAGCTGCTACGATGTCTGGACAAGATAATGGGGGTGAAATTGCTGACAACTTATCAGATGGTGCTAAAAGGGAACGCACAATGCCAGATTTATGTGTAATATGCCTCGAGCAGGAATATAATTCCGTTTTTGTTCCGTGTGGGCATATGTGCTGCTGTACAGCTTGCTCTTCTCACTTGACCAGTTGCCCTCTTTGCCGGAGACAGATAGAAAGGGCAGTAAAGACTTTCCGTCATTGA 1026 0.4483 MAMVPWRGISCCLSAAALYFLGRASGRDAEILKSVSRVNQLRELAKLLDEEILPLVVAISGRVGSETPINCEFSGLRGVMVEETAEQHFLKHNENGSWIQDSALMLSMSKEVPWYLGDGTDRVRVVGARGATGFVLPVGSEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDVGTIRIQRPTKGPFYVSPKTIEELIANLGKWARWYKCASMGLTVFGVYLIANHAIRYIMERRHRNEIQKRVLAAAATMSGQDNGGEIADNLSDGAKRERTMPDLCVICLEQEYNSVFVPCGHMCCCTACSSHLTSCPLCRRQIERAVKTFRH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05171 341 ProSiteProfiles Zinc finger RING-type profile. 294 329 IPR001841 -
Vivi1g05171 341 Pfam E3 Ubiquitin ligase 86 236 IPR022170 GO:0004842|GO:0006996|GO:0016567
Vivi1g05171 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 340 IPR013083 -
Vivi1g05171 341 PANTHER - 3 308 IPR044231 GO:0004842|GO:0016567
Vivi1g05171 341 FunFam E3 ubiquitin-protein ligase SP1 282 340 - -
Vivi1g05171 341 SUPERFAMILY RING/U-box 293 334 - -
Vivi1g05171 341 Pfam Zinc finger, C3HC4 type (RING finger) 292 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05171 Vivi-Chr1 112471242 112474883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05171 3 265 C3H Transcription Factor Family AT1G63900 74.340 4.89e-146 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05171 K15688 - gmx:100803252 600.512