Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05170 ATGAATCTTATTTACTTTTGCTTCCTTAATTGGATTAAAAAACTTCACAATAAATCAAATCTTTTCCTTTTGTTCTTTACAATATTGATTTTGATGGCGAAGATACTTTTTATCGGTGGCATCGCTTGCTGTGCGGCTGCTCCTGTTTTTTCCATAATCGGCAGAGCAGAAGAGAGGAATGCAGAAATTCTTAAATCCGTTACTCGGGTCCGGCACCTGAAGGACCTAGCACAATTGCTGGATGCAGAAAGATCACCCTTGGTTGTTACAGTTTCTGGCAACGTTGTTTCTGAAACCCCAATTGAGTGCCAGATGACTCGTTTAAGCGGTGTTATAGTAGTAGAAAGTGTTGAGAAACTTATTCTTCAGAAGGATGATGCTACTGAGCGAAAAATGAAATGCAAAGATGATGATGATTCCTGGACACTAAGTTCTAAGATAATATCATCCATTCCTAAAGAAGTTCCATGGTATCTGGATGACGGGACTGATCGTGTATGTGTGGTTGGAGCTCGTGATGCCACTGGTTTTGTATTACCTGTTAGAAACTCAACATTTAAAGAATCAGGCGAGAAAATTGTACTTAAAACCTTTGGTGATTGCAAACCTAAAAAGACGATTGGTTTCAAGAGGATTGAACGAGTACTTCCAGTTGGAACTTCCTTGAATGTTGTTGGTGAGGCCTCTAAAGATGATGACGGGACTGTTCGAATTCAGCGACCTCGCAATGGTCCATTTTATGTCTCTTCCATCACGATTGATGAACATACTACAAAATTTCTGGATTCTTCAAGGTGGTACAAGAAAACTTCTGAGTTCCTAACAGTGTTTGGTGCTAGTATAATAGTCCTAAGTGCTACTTCCTACATCTTGGAAAAGGTTGCATAG 888 0.3964 MNLIYFCFLNWIKKLHNKSNLFLLFFTILILMAKILFIGGIACCAAAPVFSIIGRAEERNAEILKSVTRVRHLKDLAQLLDAERSPLVVTVSGNVVSETPIECQMTRLSGVIVVESVEKLILQKDDATERKMKCKDDDDSWTLSSKIISSIPKEVPWYLDDGTDRVCVVGARDATGFVLPVRNSTFKESGEKIVLKTFGDCKPKKTIGFKRIERVLPVGTSLNVVGEASKDDDGTVRIQRPRNGPFYVSSITIDEHTTKFLDSSRWYKKTSEFLTVFGASIIVLSATSYILEKVA 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05170 295 PANTHER - 36 293 IPR044231 GO:0004842|GO:0016567
Vivi1g05170 295 Pfam E3 Ubiquitin ligase 138 278 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05170 Vivi-Chr1 112454241 112456860 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05170 39 292 C3H Transcription Factor Family AT1G63900 45.703 1.45e-70 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05170 K15688 - gmx:100803252 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05170 1 112454241 112456860 Vivi1g05170 1 112454241 112456860 ECH