Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05168 ATGGCGAAGATACTTTTTATCGGTGGCATCGCTTGCTGTGCGGCTGCTCCTGTTTTTTCCATAATCGGCAGAGCAGAAGAGAGGAATGCAGAAATTCTTAAATCCGTTACTCGGGTCCGGCACCTGAAGGACCTAGCACAATTGCTGGATGCAGAAAGATCACCCTTGGTTGTTACAGTTTCTGGCAACGTTGTTTCTGAAACCCCAATTGAGTGCCAGATGACTCGTTTAAGCGGTGTTATAGTAGTAGAAAGTGTTGAGAAACTTATTCTTCAGAAGGATGATGCTACTGAGCGAAAAATGAAATGCAAAGATGATGATGATTCCTGGACACTAAGTTCTAAGATAATATCATCCATTCCTAAAGAAGTTCCATGGTATCTGGATGACGGGACTGATCGTGTATGTGTGGTTGGAGCTCGTGATGCCACTGGTTTTGTATTACCTGTTAGAAACTCAACATTTAAAGAATCAGGCGAGAAAATTGTACTTAAAACCTTTGGTGATTGCAAACCTAAAAAGACGATTGGTTTCAAGAGGATTGAACGAGTACTTCCAGTTGGAACTTCCTTGAATGTTGTTGGTGAGGCCTCTAAAGATGATGACGGGACTGTTCGAATTCAGCGACCTCGCAATGGTCCATTTTATGTCTCTTCCATCACGATTGATGAACATACTACAAAATTTCTGGATTCTTCAAGGTGGTACAAGAAAACTTCTGAGTTCCTAACAGTGTTTGGTGCTAGTATAATAGTCCTAAGTGCTACTTCCTACATCTTGGAAAAGGTTGCATAG 795 0.4164 MAKILFIGGIACCAAAPVFSIIGRAEERNAEILKSVTRVRHLKDLAQLLDAERSPLVVTVSGNVVSETPIECQMTRLSGVIVVESVEKLILQKDDATERKMKCKDDDDSWTLSSKIISSIPKEVPWYLDDGTDRVCVVGARDATGFVLPVRNSTFKESGEKIVLKTFGDCKPKKTIGFKRIERVLPVGTSLNVVGEASKDDDGTVRIQRPRNGPFYVSSITIDEHTTKFLDSSRWYKKTSEFLTVFGASIIVLSATSYILEKVA 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05168 264 Pfam E3 Ubiquitin ligase 107 247 IPR022170 GO:0004842|GO:0006996|GO:0016567
Vivi1g05168 264 PANTHER - 5 262 IPR044231 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05168 Vivi-Chr1 112453927 112456860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05168 8 261 C3H Transcription Factor Family AT1G63900 45.703 2.54e-71 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05168 K15688 - gmx:100803252 259.61