Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05167 ATGGCATTTTTCGTGGGTGGCATCTCTTGCTTGACTGCTCTTGCTTTATCCATGAAAGCCATAGAACTTGAGAGGGATGCAGAATTTCTTAAATCGGCTCCTCGGGTCAAGCAGTTAAGGGACCTCAGGCAATTGCTGGATGCAGAAAAATCACCCTTGGTTGTTGCAGTTTCTGGAAGAGTTGTTTCTAAAACCCCAATTGAATGCCAGATGAGTCGTTTAAGTGGCGTTATAGTAGAAGAAAGGCTAGAGGAACTTAATCTTCATAAGAAAGTTGCTACTGAGCAAGAAATGAAATCTAATGATGATGACGATTCATGGACACTACGTACTAAGATGATATCATCCATTCCTAAAGAGGTTCCATGGTTTCTGGATGACGAGACCGATCGTGTGCGTGTGGTTGGAGCTCGTGGTGCCACTGGTTTTGAATTACCCGCTGAAAACACAACACTTGAAACCTTGGGTAATCGCATGCGTGAAAAGACGATTGGATTCAAGAGGATTGAATGGGTACTTCCAGTTGGAACTTCATTGAATGTTGTTGGTGAGGCCTCTAAAGATGATGCCGGAACCATTTGGATTCAGCGACCTCCCAAAGGACCATTTTATGTCTCTTGCAAAACGATTGACGAACATGCTACAGATTTGGCGAAATCTTCAAGCTGGCGTATGGCTACTTCTGCGTGCATGACTGGCTTTGGTGCTTGGTGCTTGTTTAGCCTACTATGA 732 0.4413 MAFFVGGISCLTALALSMKAIELERDAEFLKSAPRVKQLRDLRQLLDAEKSPLVVAVSGRVVSKTPIECQMSRLSGVIVEERLEELNLHKKVATEQEMKSNDDDDSWTLRTKMISSIPKEVPWFLDDETDRVRVVGARGATGFELPAENTTLETLGNRMREKTIGFKRIEWVLPVGTSLNVVGEASKDDAGTIWIQRPPKGPFYVSCKTIDEHATDLAKSSSWRMATSACMTGFGAWCLFSLL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05167 243 Pfam E3 Ubiquitin ligase 97 232 IPR022170 GO:0004842|GO:0006996|GO:0016567
Vivi1g05167 243 PANTHER - 4 239 IPR044231 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05167 Vivi-Chr1 112439159 112443756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05167 6 239 C3H Transcription Factor Family AT1G63900 43.089 3.95e-57 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05167 K15688 - gmx:100803252 212.231