Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05165 ATGTCTGACCAAAATACTGAGAAAGACCAAGAGCTTCACTTATCCATGACACCACAAGTGCAACACCAAACACTAGACACAAATACCAAAACAAAAATCAACAATCACCCATCATTCCCAAACATTGTTCCTCGTCCTCGAGGTCGTCCAGTTGGATCCAAGAACAAAGTTAAGACATCTATCACTAAAACACATGACAATGTACTCTGTTCTCACAAGCTTGAGATATCTAGTGGATATGACATAGTAAATAGTATTTTTGGTTATGTTCATCATCCAGGGAGGGGAATATGCATCTTCAATGGAAAAGGAATGGTGGAAAAAGTCACTCTCCGTCAATCCACGGGGAAAGTTGTAACTCTCCAGGGAAAGTTCCAGATTATTTCGATATCTGGAACAATTCCCTCACCGACGACACTGGGGAATGTTGGAGGATTGATGATTAACTTGTTAGGAACTACAAGACAAGTAATTGGAGGGACTGTAATTCCCCCTCTAGTGGCTTTGAGCCCGGTGGTGCTGATGGTTGCTTCCTTTGCAAGCTCTGAATTTGAAAGGGTTTCTTTGGTGCAATGTTTCAAAAACCGAACCGAAAGAAAGAATAGTTAA 609 0.4122 MSDQNTEKDQELHLSMTPQVQHQTLDTNTKTKINNHPSFPNIVPRPRGRPVGSKNKVKTSITKTHDNVLCSHKLEISSGYDIVNSIFGYVHHPGRGICIFNGKGMVEKVTLRQSTGKVVTLQGKFQIISISGTIPSPTTLGNVGGLMINLLGTTRQVIGGTVIPPLVALSPVVLMVASFASSEFERVSLVQCFKNRTERKNS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05165 202 PIRSF ESCAROLA 1 199 IPR014476 GO:0003680
Vivi1g05165 202 Gene3D - 71 194 - -
Vivi1g05165 202 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 23 190 IPR014476 GO:0003680
Vivi1g05165 202 Pfam Plants and Prokaryotes Conserved (PCC) domain 72 180 IPR005175 -
Vivi1g05165 202 CDD DUF296 72 179 IPR005175 -
Vivi1g05165 202 ProSiteProfiles PPC domain profile profile. 66 200 IPR005175 -
Vivi1g05165 202 MobiDBLite consensus disorder prediction 11 38 - -
Vivi1g05165 202 MobiDBLite consensus disorder prediction 1 57 - -
Vivi1g05165 202 SUPERFAMILY AF0104/ALDC/Ptd012-like 71 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05165 Vivi-Chr1 112429643 112430251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05165 45 189 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 50.000 2.51e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05165 - - psat:127095716 255.373