Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05163 ATGAAGGGAAATCAATATAGAGTGAATGTTGGGTTTAGTGACAGAACACCTGATAAAGATGATGAGGACAATATATGTCTACAGACTGGTGAAGAATTTTCTGCCGAGTTCTTACGCGACCGGGTTGGCTTAAGAAGGTTTCCTGTTATAACTGATGTAGAGCAGCAGCACATGCCAAACAGAATGGACTTCAATATTAATATTAATAACAATTATCAGCCGGTTTACGAGGATCAAAAACATGTCCTTGGGCTAGGGAGAATGAATTCTGATAGCAATTTGGATTTGTCTGATATTGCTTTTGCTAGAGGCTATGTTGCTGAAGCTGACAACAGGGCATATCATAATAATTTGGGCAGATACCAGTGTGAACATGGTGGTATCAGACAAGCATCAAGTGTGTTTTCTAGACAATTATCAACTAGGTTATCTGACGGATGCGATCAAGTTGCCTCGGGATCAAATACTCCTCATTCATGTCAACCTTATGGAACAGTATTCTCAGAAGGTTCCTTCTACAAAAAGATAAAGTTTCTTTGTAGTTTTGGAGGTCGAATACTGCCAAGGCCAAATGATGCGAAGCTCAGATATGTGGGGGGAGAGACGCGGATTATTTCGATCAGAAAAAACATCACACATGAGGAACTTACGAGGAAGACTTATGATATTTGCAATCAAACTCACATTATCAAATACCAGCTTCCTGGAGAGGATCTTGATGCTCTTATTTCTGTTTGTTCTGATGAGGATCTTCATCATATGATTGAGGAGTATGAGGAGCTTGAAAGAGGTGGAGGCTCGCAACGACTGAGAATTTTTCTCATAGCTTCAAATGAATCAGAGAGTCCTAGTTCTAATGAACCAAGAGTCAATCAGCAAAGTGATGCTGATTATCATTATGTTGTTGCTGTTAATGGTATACTAGATCCAAGTCCGCGAAAGAATCTTAGTGGACCGAATCTGGCAAGCCATGGAAGCCAGTTTACAACTGCCTCTGATTACAACAGTCCACATTTCCATAGGGAATCATCCACATATGCATTTGCTTCAGAGGGTTTGGATTGCAGCCCAACCTCTTCGAATTTGGCAGGCATAATGTCAAAACAAAGTCCATTTGTAACATCAATGGCGGGCAAATCGTTTAATCAAACGCCACCATCTCCCATTTGTGCACAGCCTAAAGATCCAAATATTTCTAATGTCCAGTTATTTACGGATCAACCATACAATGTTGTTAATGAAAACATTATTCCCTATGTCATGGAAAAAATTCCACGTGATAGTTCTTTGTATGTAGACAGTACCAGTTATGTTGATCCCATTGCATATTATAACAATCTCCCCCAAGGGCCTCCATGTGTGAACCACCATCCTAGTAATCAATATCCATTGGAGTCTGACCAAATCAGGAAGTCTAATGCTGATTTTCATTTTCACAGACGAAACAATAGTAAAGAATTTGTTTCTTCTGCAATTTCTAATCAGACTGATATGAAATTTGAGAGGCCTTTAGTAAACAAAGAAGGTTCATACCATTTTAACAAGATTGTCACTCACCCACATCAGTCATCGGGTGTATTCTCAGTGTCTGGTGATAAGGATGTTTCTCAGTACAGAATGTTGCATGCACTCTCTGACTCAACGCTTCTGGAGAATAGTGAGAACTACAAAGGTCACCTGCATTTTCCGCTTAATGTTGAGAGAGACAAATTGTCGTCACTGGGAACTTCAAGCTCTTTGGAAGAATGTTCAATGCAGCCAGAAGAGATAAGTGATGGGAAAGAACGTACAGTTTTGCATCAAAATTGGCCGACTTTTGGAATGACTGATAGTTGCAAGCGATTGTCAGAAATCGGTAAAGAGAACCTACAATGTGCAGGTAAGAGCACTGATTGGTTTGTTGAAAAAGTTGGAGCTGTGCCACCACAGTTACAGTACATCTACTATCAACATGGTGCTTGCTCGTCTTCACCAGATTTACAAAGCAGTGAATGCAGTGATTCTGCTGCATCACTTATCTCGTCACATTTGGCTAGATGCATGACAGAGCAACCAAATGGTATACCGTTCGACACAATTGCTTCTGAGTTTTCTATGATAAGCCAAAGTTCACCAATGCATCACCAATTTGCTGTGTCAGAGACCAAAGATGGTCAACCACCTCCCCGTGGCTTTTTTGAGATACCGCCTATTGACCCCCAAACTGACACTGAATCTGTGCTACCTATCTCGTATCCAGATGTGGTTTCTTCTTCGATAAGAGAGGTTCTTGGCTCTGACGACAATCCTGCATACTATCAGAACCAAAAGGAAGAAAACATAGTCACTAAGAAACAATCTCACGAATACATTGATGAATTTCGCATCAACAAGGCAGAATCAGCAGCAGTTGTCAAAGAATCAATTGATTATATTTCTTCAAGTATCCAGTCATGCTTACAAGTTGTTTCAAATACAAATGAAGAGGGCAAACATTCACATTCTGAAAAAGCAAGGGTAGTGTGTGTTAATCCAGAATCTGAAAGTAAGCTTGCAAAAGCTGATAATGAAAACTTCAATAAGCCTATTGGTGATTCAGAAACTGCTGAAACAGAGTCGGAACTTTATGGTTTACAGATTATTGAGAATGATGATCTTGAAGAATTACATGAGTTAGGATCTGGAACCTTTGGAACCGTTTATCATGGAAAATGGAGAGGAACAGATGTTGCAATTAAGAGAATAAAAAGTAGCTGTTTCGCTGGTAGAATGTCAGAGCAAGAGCGGTTGACTAAAGATTTTTGGAGGGAGGCAAAGATTCTATCAACTCTTCACCATCCAAATGTGGTGGCATTTTATGGGGTAGTTCCAGATGGCCCAGGTGGAACATTGTCAACTGTAACAGAATACATGTTGCACGGATCACTGAGAAATGTTCTCTTGAAGAAGGAGAGAGTGCTTGACCGTCGTAAAAGGATCATGATTGCAATGGATGCAGCCTTTGGCATGGAATATTTGCATTTAAAAAGTATTGTTCATTTTGATTTGAAGTGTGATAATTTGCTTGTCAACTTGGGTGATCCTGAGCGGCCTGTATGCAAGGTTGGAGATTTTGGGCTATCGAGAATTAAACGCAACACACTTGTTTCTGGTGGTGTCAGAGGGACTCTTCCATGGATGGCACCAGAACTACTGGATGGTAACAGCTGCAAAGTATCTGAGAAGGTCGATATTTTCTCATTTGGTATCACAATGTGGGAAATCTTGACTGGGGAAGAACCTTATGCTAACATGCACTGTGGTGCCATCATAGGAGGTATTGTTAATAATACGCTTAGGCCGTCTATTCCGAAACGCTGTGATTCTGAGTGGAAAAAGTTGATGGAGGAGTGTTGGAGCCCTGATCCTGAAGCCAGGCCAACCTTCACAGAAGTTAAAAATAGACTCCGCAACATGTTAGCTGCACTACAGAAAAAGAGACCTAATGTCGGGATTCGGTGA 3480 0.4063 MKGNQYRVNVGFSDRTPDKDDEDNICLQTGEEFSAEFLRDRVGLRRFPVITDVEQQHMPNRMDFNININNNYQPVYEDQKHVLGLGRMNSDSNLDLSDIAFARGYVAEADNRAYHNNLGRYQCEHGGIRQASSVFSRQLSTRLSDGCDQVASGSNTPHSCQPYGTVFSEGSFYKKIKFLCSFGGRILPRPNDAKLRYVGGETRIISIRKNITHEELTRKTYDICNQTHIIKYQLPGEDLDALISVCSDEDLHHMIEEYEELERGGGSQRLRIFLIASNESESPSSNEPRVNQQSDADYHYVVAVNGILDPSPRKNLSGPNLASHGSQFTTASDYNSPHFHRESSTYAFASEGLDCSPTSSNLAGIMSKQSPFVTSMAGKSFNQTPPSPICAQPKDPNISNVQLFTDQPYNVVNENIIPYVMEKIPRDSSLYVDSTSYVDPIAYYNNLPQGPPCVNHHPSNQYPLESDQIRKSNADFHFHRRNNSKEFVSSAISNQTDMKFERPLVNKEGSYHFNKIVTHPHQSSGVFSVSGDKDVSQYRMLHALSDSTLLENSENYKGHLHFPLNVERDKLSSLGTSSSLEECSMQPEEISDGKERTVLHQNWPTFGMTDSCKRLSEIGKENLQCAGKSTDWFVEKVGAVPPQLQYIYYQHGACSSSPDLQSSECSDSAASLISSHLARCMTEQPNGIPFDTIASEFSMISQSSPMHHQFAVSETKDGQPPPRGFFEIPPIDPQTDTESVLPISYPDVVSSSIREVLGSDDNPAYYQNQKEENIVTKKQSHEYIDEFRINKAESAAVVKESIDYISSSIQSCLQVVSNTNEEGKHSHSEKARVVCVNPESESKLAKADNENFNKPIGDSETAETESELYGLQIIENDDLEELHELGSGTFGTVYHGKWRGTDVAIKRIKSSCFAGRMSEQERLTKDFWREAKILSTLHHPNVVAFYGVVPDGPGGTLSTVTEYMLHGSLRNVLLKKERVLDRRKRIMIAMDAAFGMEYLHLKSIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNSCKVSEKVDIFSFGITMWEILTGEEPYANMHCGAIIGGIVNNTLRPSIPKRCDSEWKKLMEECWSPDPEARPTFTEVKNRLRNMLAALQKKRPNVGIR 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05163 1159 Gene3D - 194 277 - -
Vivi1g05163 1159 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1004 1016 IPR008271 GO:0004672|GO:0006468
Vivi1g05163 1159 SUPERFAMILY CAD & PB1 domains 192 285 - -
Vivi1g05163 1159 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 195 277 - -
Vivi1g05163 1159 PRINTS Tyrosine kinase catalytic domain signature 1113 1135 IPR001245 GO:0004672|GO:0006468
Vivi1g05163 1159 PRINTS Tyrosine kinase catalytic domain signature 1069 1091 IPR001245 GO:0004672|GO:0006468
Vivi1g05163 1159 PRINTS Tyrosine kinase catalytic domain signature 961 974 IPR001245 GO:0004672|GO:0006468
Vivi1g05163 1159 PRINTS Tyrosine kinase catalytic domain signature 998 1016 IPR001245 GO:0004672|GO:0006468
Vivi1g05163 1159 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 872 966 - -
Vivi1g05163 1159 CDD STKc_MAP3K-like 885 1142 - -
Vivi1g05163 1159 SUPERFAMILY Protein kinase-like (PK-like) 867 1142 IPR011009 -
Vivi1g05163 1159 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1g05163 1159 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 967 1157 - -
Vivi1g05163 1159 PANTHER SERINE-THREONINE PROTEIN KINASE 242 1143 - -
Vivi1g05163 1159 ProSitePatterns Protein kinases ATP-binding region signature. 885 906 IPR017441 GO:0005524
Vivi1g05163 1159 Gene3D Transferase(Phosphotransferase) domain 1 967 1156 - -
Vivi1g05163 1159 ProSiteProfiles Protein kinase domain profile. 879 1146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05163 1159 SMART serkin_6 879 1146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05163 1159 CDD PB1_UP2 179 275 - -
Vivi1g05163 1159 Gene3D Phosphorylase Kinase; domain 1 872 966 - -
Vivi1g05163 1159 SMART PB1_new 190 277 IPR000270 GO:0005515
Vivi1g05163 1159 Pfam PB1 domain 191 274 IPR000270 GO:0005515
Vivi1g05163 1159 Pfam Protein tyrosine and serine/threonine kinase 881 1142 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05163 Vivi-Chr1 112401676 112409561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05163 175 307 MAP Kinase Kinase Kinase AT1G16270 57.463 2.15e-39 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vivi1g05163 PK_Tyr_Ser-Thr 6.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05163 - - tpra:123914366 1799.64