Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05162 ATGAATAATGAGGATCCTGGAATTTCAGGAAATCAATATAGAGTGAATGTTGGGTTTAGTGACAGAACACCTGATAAAGATGATGAGGACAATATATGTCTACAGACTGGTGAAGAATTTTCTGCCGAGTTCTTACGCGACCGGGTTGGCTTAAGAAGGTTTCCTGTTATAACTGATGTAGAGCAGCAGCACATGCCAAACAGAATGGACTTCAATATTAATATTAATAACAATTATCAGCCGGTTTACGAGGATCAAAAACATGTCCTTGGGCTAGGGAGAATGAATTCTGATAGCAATTTGGATTTGTCTGATATTGCTTTTGCTAGAGGCTATGTTGCTGAAGCTGACAACAGGGCATATCATAATAATTTGGGCAGATACCAGTGTGAACATGGTGGTATCAGACAAGCATCAAGTGTGTTTTCTAGACAATTATCAACTAGGTTATCTGACGGATGCGATCAAGTTGCCTCGGGATCAAATACTCCTCATTCATGTCAACCTTATGGAACAGTATTCTCAGAAGGTTCCTTCTACAAAAAGATAAAGTTTCTTTGTAGTTTTGGAGGTCGAATACTGCCAAGGCCAAATGATGCGAAGCTCAGATATGTGGGGGGAGAGACGCGGATTATTTCGATCAGAAAAAACATCACACATGAGGAACTTACGAGGAAGACTTATGATATTTGCAATCAAACTCACATTATCAAATACCAGCTTCCTGGAGAGGATCTTGATGCTCTTATTTCTGTTTGTTCTGATGAGGATCTTCATCATATGATTGAGGAGTATGAGGAGCTTGAAAGAGGTGGAGGCTCGCAACGACTGAGAATTTTTCTCATAGCTTCAAATGAATCAGAGAGTCCTAGTTCTAATGAACCAAGAGTCAATCAGCAAAGTGATGCTGATTATCATTATGTTGTTGCTGTTAATGGTATACTAGATCCAAGTCCGCGAAAGAATCTTAGTGGACCGAATCTGGCAAGCCATGGAAGCCAGTTTACAACTGCCTCTGATTACAACAGTCCACATTTCCATAGGGAATCATCCACATATGCATTTGCTTCAGAGGGTTTGGATTGCAGCCCAACCTCTTCGAATTTGGCAGGCATAATGTCAAAACAAAGTCCATTTGTAACATCAATGGCGGGCAAATCGTTTAATCAAACGCCACCATCTCCCATTTGTGCACAGCCTAAAGATCCAAATATTTCTAATGTCCAGTTATTTACGGATCAACCATACAATGTTGTTAATGAAAACATTATTCCCTATGTCATGGAAAAAATTCCACGTGATAGTTCTTTGTATGTAGACAGTACCAGTTATGTTGATCCCATTGCATATTATAACAATCTCCCCCAAGGGCCTCCATGTGTGAACCACCATCCTAGTAATCAATATCCATTGGAGTCTGACCAAATCAGGAAGTCTAATGCTGATTTTCATTTTCACAGACGAAACAATAGTAAAGAATTTGTTTCTTCTGCAATTTCTAATCAGACTGATATGAAATTTGAGAGGCCTTTAGTAAACAAAGAAGGTTCATACCATTTTAACAAGATTGTCACTCACCCACATCAGTCATCGGGTGTATTCTCAGTGTCTGGTGATAAGGATGTTTCTCAGTACAGAATGTTGCATGCACTCTCTGACTCAACGCTTCTGGAGAATAGTGAGAACTACAAAGGTCACCTGCATTTTCCGCTTAATGTTGAGAGAGACAAATTGTCGTCACTGGGAACTTCAAGCTCTTTGGAAGAATGTTCAATGCAGCCAGAAGAGATAAGTGATGGGAAAGAACGTACAGTTTTGCATCAAAATTGGCCGACTTTTGGAATGACTGATAGTTGCAAGCGATTGTCAGAAATCGGTAAAGAGAACCTACAATGTGCAGGTAAGAGCACTGATTGGTTTGTTGAAAAAGTTGGAGCTGTGCCACCACAGTTACAGTACATCTACTATCAACATGGTGCTTGCTCGTCTTCACCAGATTTACAAAGCAGTGAATGCAGTGATTCTGCTGCATCACTTATCTCGTCACATTTGGCTAGATGCATGACAGAGCAACCAAATGGTATACCGTTCGACACAATTGCTTCTGAGTTTTCTATGATAAGCCAAAGTTCACCAATGCATCACCAATTTGCTGTGTCAGAGACCAAAGATGGTCAACCACCTCCCCGTGGCTTTTTTGAGATACCGCCTATTGACCCCCAAACTGACACTGAATCTGTGCTACCTATCTCGTATCCAGATGTGGTTTCTTCTTCGATAAGAGAGGTTCTTGGCTCTGACGACAATCCTGCATACTATCAGAACCAAAAGGAAGAAAACATAGTCACTAAGAAACAATCTCACGAATACATTGATGAATTTCGCATCAACAAGGCAGAATCAGCAGCAGTTGTCAAAGAATCAATTGATTATATTTCTTCAAGTATCCAGTCATGCTTACAAGTTGTTTCAAATACAAATGAAGAGGGCAAACATTCACATTCTGAAAAAGCAAGGGTAGTGTGTGTTAATCCAGAATCTGAAAGTAAGCTTGCAAAAGCTGATAATGAAAACTTCAATAAGCCTATTGGTGATTCAGAAACTGCTGAAACAGAGTCGGAACTTTATGGTTTACAGATTATTGAGAATGATGATCTTGAAGAATTACATGAGTTAGGATCTGGAACCTTTGGAACCGTTTATCATGGAAAATGGAGAGGAACAGATGTTGCAATTAAGAGAATAAAAAGTAGCTGTTTCGCTGGTAGAATGTCAGAGCAAGAGCGGTTGACTAAAGATTTTTGGAGGGAGGCAAAGATTCTATCAACTCTTCACCATCCAAATGTGGTGGCATTTTATGGGGTAGTTCCAGATGGCCCAGGTGGAACATTGTCAACTGTAACAGAATACATGTTGCACGGATCACTGAGAAATGTTCTCTTGAAGAAGGAGAGAGTGCTTGACCGTCGTAAAAGGATCATGATTGCAATGGATGCAGCCTTTGGCATGGAATATTTGCATTTAAAAAGTATTGTTCATTTTGATTTGAAGTGTGATAATTTGCTTGTCAACTTGGGTGATCCTGAGCGGCCTGTATGCAAGGTTGGAGATTTTGGGCTATCGAGAATTAAACGCAACACACTTGTTTCTGGTGGTGTCAGAGGGACTCTTCCATGGATGGCACCAGAACTACTGGATGGTAACAGCTGCAAAGTATCTGAGAAGGTCGATATTTTCTCATTTGGTATCACAATGTGGGAAATCTTGACTGGGGAAGAACCTTATGCTAACATGCACTGTGGTGCCATCATAGGAGGTATTGTTAATAATACGCTTAGGCCGTCTATTCCGAAACGCTGTGATTCTGAGTGGAAAAAGTTGATGGAGGAGTGTTGGAGCCCTGATCCTGAAGCCAGGCCAACCTTCACAGAAGTTAAAAATAGACTCCGCAACATGTTAGCTGCACTACAGAAAAAGAGACCTAATGTCGGGATTCGGTGA 3501 0.4059 MNNEDPGISGNQYRVNVGFSDRTPDKDDEDNICLQTGEEFSAEFLRDRVGLRRFPVITDVEQQHMPNRMDFNININNNYQPVYEDQKHVLGLGRMNSDSNLDLSDIAFARGYVAEADNRAYHNNLGRYQCEHGGIRQASSVFSRQLSTRLSDGCDQVASGSNTPHSCQPYGTVFSEGSFYKKIKFLCSFGGRILPRPNDAKLRYVGGETRIISIRKNITHEELTRKTYDICNQTHIIKYQLPGEDLDALISVCSDEDLHHMIEEYEELERGGGSQRLRIFLIASNESESPSSNEPRVNQQSDADYHYVVAVNGILDPSPRKNLSGPNLASHGSQFTTASDYNSPHFHRESSTYAFASEGLDCSPTSSNLAGIMSKQSPFVTSMAGKSFNQTPPSPICAQPKDPNISNVQLFTDQPYNVVNENIIPYVMEKIPRDSSLYVDSTSYVDPIAYYNNLPQGPPCVNHHPSNQYPLESDQIRKSNADFHFHRRNNSKEFVSSAISNQTDMKFERPLVNKEGSYHFNKIVTHPHQSSGVFSVSGDKDVSQYRMLHALSDSTLLENSENYKGHLHFPLNVERDKLSSLGTSSSLEECSMQPEEISDGKERTVLHQNWPTFGMTDSCKRLSEIGKENLQCAGKSTDWFVEKVGAVPPQLQYIYYQHGACSSSPDLQSSECSDSAASLISSHLARCMTEQPNGIPFDTIASEFSMISQSSPMHHQFAVSETKDGQPPPRGFFEIPPIDPQTDTESVLPISYPDVVSSSIREVLGSDDNPAYYQNQKEENIVTKKQSHEYIDEFRINKAESAAVVKESIDYISSSIQSCLQVVSNTNEEGKHSHSEKARVVCVNPESESKLAKADNENFNKPIGDSETAETESELYGLQIIENDDLEELHELGSGTFGTVYHGKWRGTDVAIKRIKSSCFAGRMSEQERLTKDFWREAKILSTLHHPNVVAFYGVVPDGPGGTLSTVTEYMLHGSLRNVLLKKERVLDRRKRIMIAMDAAFGMEYLHLKSIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNSCKVSEKVDIFSFGITMWEILTGEEPYANMHCGAIIGGIVNNTLRPSIPKRCDSEWKKLMEECWSPDPEARPTFTEVKNRLRNMLAALQKKRPNVGIR 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05162 1166 CDD STKc_MAP3K-like 892 1149 - -
Vivi1g05162 1166 Pfam PB1 domain 198 281 IPR000270 GO:0005515
Vivi1g05162 1166 SUPERFAMILY CAD & PB1 domains 199 292 - -
Vivi1g05162 1166 SMART PB1_new 197 284 IPR000270 GO:0005515
Vivi1g05162 1166 SUPERFAMILY Protein kinase-like (PK-like) 874 1149 IPR011009 -
Vivi1g05162 1166 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 879 973 - -
Vivi1g05162 1166 MobiDBLite consensus disorder prediction 1 18 - -
Vivi1g05162 1166 Gene3D Phosphorylase Kinase; domain 1 879 973 - -
Vivi1g05162 1166 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 974 1164 - -
Vivi1g05162 1166 PRINTS Tyrosine kinase catalytic domain signature 1005 1023 IPR001245 GO:0004672|GO:0006468
Vivi1g05162 1166 PRINTS Tyrosine kinase catalytic domain signature 1076 1098 IPR001245 GO:0004672|GO:0006468
Vivi1g05162 1166 PRINTS Tyrosine kinase catalytic domain signature 1120 1142 IPR001245 GO:0004672|GO:0006468
Vivi1g05162 1166 PRINTS Tyrosine kinase catalytic domain signature 968 981 IPR001245 GO:0004672|GO:0006468
Vivi1g05162 1166 CDD PB1_UP2 186 282 - -
Vivi1g05162 1166 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 202 284 - -
Vivi1g05162 1166 Gene3D Transferase(Phosphotransferase) domain 1 974 1163 - -
Vivi1g05162 1166 PANTHER SERINE-THREONINE PROTEIN KINASE 250 1150 - -
Vivi1g05162 1166 Gene3D - 201 284 - -
Vivi1g05162 1166 Pfam Protein tyrosine and serine/threonine kinase 888 1149 IPR001245 GO:0004672|GO:0006468
Vivi1g05162 1166 SMART serkin_6 886 1153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05162 1166 ProSiteProfiles Protein kinase domain profile. 886 1153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05162 1166 ProSitePatterns Protein kinases ATP-binding region signature. 892 913 IPR017441 GO:0005524
Vivi1g05162 1166 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1011 1023 IPR008271 GO:0004672|GO:0006468
Vivi1g05162 1166 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05162 Vivi-Chr1 112401676 112409561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05162 182 314 MAP Kinase Kinase Kinase AT1G16270 57.463 2.11e-39 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vivi1g05162 PK_Tyr_Ser-Thr 7e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05162 - - tpra:123914366 1816.2