Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05157 ATGCCCACAAGCGCTTGCAGTACAATCTCAGATTCGTCACTGCTGATGGCAAAGAAGTTTATGGAGGTTGCAAAGGCTGAAAGGCTTCAAGTTAATGAGATTGCTCTTGAGGAATTAGCAGAAAGAGTTAATGGAGATATGCGAATGGCACTAAACCAGTTACAATATATGGGCCTCTCCATGTCAGTTATCAACTACGATGATATCAAGCAGCGCTTACTTACCAATGCGAAAGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTAATTTCAATGCTGGAAAGATGAGAATGGACGAGAGGATTACTCTTAGCATGAGTGACCCTGATCTTGTTCCTCTACTTATCCAGGTGATATAA 369 0.4092 MPTSACSTISDSSLLMAKKFMEVAKAERLQVNEIALEELAERVNGDMRMALNQLQYMGLSMSVINYDDIKQRLLTNAKDEDISPFTAVDKLFNFNAGKMRMDERITLSMSDPDLVPLLIQVI 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05157 122 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 15 120 - -
Vivi1g05157 122 Gene3D - 13 81 - -
Vivi1g05157 122 SUPERFAMILY post-AAA+ oligomerization domain-like 82 120 IPR008921 GO:0003677|GO:0006260
Vivi1g05157 122 CDD HLD_clamp_RFC 16 71 - -
Vivi1g05157 122 FunFam Replication factor C subunit 1 14 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05157 Vivi-Chr1 112306565 112309838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05157 16 120 Core DNA Replication Machinery Family AT5G22010 80.952 1.44e-55 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05157 K10754 - vvo:131643873 235.728