Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05151 ATGAGTAAGAAAGAAGAACTTACCTGTGACATTGAGAGAAGCCAAGAGCTTCCCCAATTCATGGCACAACAATCACAACATCAAACACCAAACACCAATACCACCATAGATCAAAGCAATACAAAGTCATCTGTTGTCGGTAACCGCCTCACGGGGCAGCCACTTGTCTCCATGAACAAGTCCAATATGCCTATCACGGCAACATGTGTCATTCCTAATGACATTTGTTCTCATGTGTTTGAGATCGCTGCTAAAGCAGACGTCTCAAAAAGCCTCTTTGATTATGTTCGTCGTCGAGGGAGAGGCATAAGCATCCTTAGTGGGAATGGAGAGGTGGCACAAGCCACGCTTCAGCAATCCACGGGAAAAATTGTAACCCTTCATGGATGGTTCCAGATTAATTCGATATCTGGAACAATTCCCCAGTCGCCCACACGGGCAGAGGTGGGAGGTTTGTTTGTTAAATTGTCCGATACTAATGGACAAGTGGTTGGAGGAAATGTAATTCCTCCTTTGGTGGCATTGAGCCCGATATTTTTGGTCGCTTATTCTTTTGCAGACATTGTATTTAAAAAAGAGACCTTTGTGGCTTATGACAAGGATAATCAAGATGTGGTGTGCCTCGATGAAGCTGAGCACGAGGCAAAAATTGGTGGTAACTTTTTAAATTTTGAGGATCAACAATTGGAATGA 693 0.4343 MSKKEELTCDIERSQELPQFMAQQSQHQTPNTNTTIDQSNTKSSVVGNRLTGQPLVSMNKSNMPITATCVIPNDICSHVFEIAAKADVSKSLFDYVRRRGRGISILSGNGEVAQATLQQSTGKIVTLHGWFQINSISGTIPQSPTRAEVGGLFVKLSDTNGQVVGGNVIPPLVALSPIFLVAYSFADIVFKKETFVAYDKDNQDVVCLDEAEHEAKIGGNFLNFEDQQLE 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05151 230 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 25 212 IPR014476 GO:0003680
Vivi1g05151 230 ProSiteProfiles PPC domain profile profile. 72 212 IPR005175 -
Vivi1g05151 230 CDD DUF296 78 174 IPR005175 -
Vivi1g05151 230 Gene3D - 77 201 - -
Vivi1g05151 230 MobiDBLite consensus disorder prediction 21 44 - -
Vivi1g05151 230 Pfam Plants and Prokaryotes Conserved (PCC) domain 78 186 IPR005175 -
Vivi1g05151 230 SUPERFAMILY AF0104/ALDC/Ptd012-like 77 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05151 Vivi-Chr1 112215712 112216404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05151 43 192 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 44.099 1.02e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05151 - - vvo:131651779 451.055