LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g05148	ATGGAAGATACATTTCCCAAGATGGAAATCTTTACACAAAAGGAATTACCAACTTGTTTGCAAGAAATAGTAACAACAAAAGAATCCAAGTATTTGGAAGATACAATTATAAGAAGAGACTCTTACTCTCTCACTTCTTCATCAATATCACCATCATCACCACAGAAGTTTTTCTGGTGTGCTTCAAATTCTATTTCAATGAAACAAGAGGTAGCACCATTAGGTTTAACCACTTCTAATGTTTTTGCCTCAGATATAAAACATGGTTTTGTTCCTCTAAATCTCTTGGAAACTCTCCCGACGTTGAGCGTTAATCCAGTGTTTGATGAGACAACAAAATCTATAGGCTCTTCTTCTGATACATTGAAGTATCCGAATTTGAGTTTGTTTTTGCAGGAACCATCTATGCTATACTCATCAACATCACATATCAAAAGTAATGAAGTCATGTCAACAACTTCAAATCCAAGTTACCATGTGCCACCGCAATTTGGCCTAACTCAGCATCAACAAAAGATTGGCTATAACAAGACTTTCAATGAGAATTGGTTGAGTGCTACAAAGACTCAACCTATGAAATATAGTGGAAGAGGGAAGCTTTTCAAAGGGGTGAGGCAGAGACATTGGGGAAAATGGGTTGCTGAAATTAGGCTACCAAGAAACCGGACAAGGGTTTGGTTAGGGACATTTGACACAGCTGAAGATGCCGCAATTGCATATGATACAGCAGCATATATACTAAGAGGAGAATGTGCTCAGTTGAATTTTCCTGATCTAAAGCATGTGATTCAAGCGAATTCGTTGAATGGAACAACTGCTTCACTTGTTGAGGCAAAACTTCAAGCCATATCACAACAAGGTGGTTCTTCTTCTGATAGAAAGCAAGGTGATTCACTAGCTAGATCAAGTAATAAGCATGTTGATGAGATTGAAAATGGAAAGGATCATGAAAGTATGAAGGAGTTGAAGGTTGGAGGTGACACAAATGAGAGAAGCAAAAGTATGCAGAATGAGATATGTGATGTTGAAACTGTTCAGCTAAGTAGAATGCCATCTTTAGATATGGATATCATTTGGAATGAACTTCTAGTTTCTGGTTCATGA	1104	0.375	MEDTFPKMEIFTQKELPTCLQEIVTTKESKYLEDTIIRRDSYSLTSSSISPSSPQKFFWCASNSISMKQEVAPLGLTTSNVFASDIKHGFVPLNLLETLPTLSVNPVFDETTKSIGSSSDTLKYPNLSLFLQEPSMLYSSTSHIKSNEVMSTTSNPSYHVPPQFGLTQHQQKIGYNKTFNENWLSATKTQPMKYSGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGECAQLNFPDLKHVIQANSLNGTTASLVEAKLQAISQQGGSSSDRKQGDSLARSSNKHVDEIENGKDHESMKELKVGGDTNERSKSMQNEICDVETVQLSRMPSLDMDIIWNELLVSGS	367

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vivi1g05148	367	ProSiteProfiles	AP2/ERF domain profile.	200	257	IPR001471	GO:0003700\|GO:0006355
Vivi1g05148	367	PRINTS	Ethylene responsive element binding protein signature	223	239	IPR001471	GO:0003700\|GO:0006355
Vivi1g05148	367	PRINTS	Ethylene responsive element binding protein signature	201	212	IPR001471	GO:0003700\|GO:0006355
Vivi1g05148	367	MobiDBLite	consensus disorder prediction	284	337	-	-
Vivi1g05148	367	SMART	rav1_2	200	263	IPR001471	GO:0003700\|GO:0006355
Vivi1g05148	367	MobiDBLite	consensus disorder prediction	298	328	-	-
Vivi1g05148	367	CDD	AP2	199	259	IPR001471	GO:0003700\|GO:0006355
Vivi1g05148	367	SUPERFAMILY	DNA-binding domain	200	258	IPR016177	GO:0003677
Vivi1g05148	367	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	67	362	-	-
Vivi1g05148	367	FunFam	Ethylene-responsive transcription factor 2	199	258	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g05148	Vivi-Chr1	112193651	112195223	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g05148	1	362	AP2-EREBP Transcription Factor Family	AT4G13620	38.481	1.32e-63	206

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Vivi1g05148		AP2	1.7e-12	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g05148	-		-	gmx:100820013	405.986

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