Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05148 ATGGAAGATACATTTCCCAAGATGGAAATCTTTACACAAAAGGAATTACCAACTTGTTTGCAAGAAATAGTAACAACAAAAGAATCCAAGTATTTGGAAGATACAATTATAAGAAGAGACTCTTACTCTCTCACTTCTTCATCAATATCACCATCATCACCACAGAAGTTTTTCTGGTGTGCTTCAAATTCTATTTCAATGAAACAAGAGGTAGCACCATTAGGTTTAACCACTTCTAATGTTTTTGCCTCAGATATAAAACATGGTTTTGTTCCTCTAAATCTCTTGGAAACTCTCCCGACGTTGAGCGTTAATCCAGTGTTTGATGAGACAACAAAATCTATAGGCTCTTCTTCTGATACATTGAAGTATCCGAATTTGAGTTTGTTTTTGCAGGAACCATCTATGCTATACTCATCAACATCACATATCAAAAGTAATGAAGTCATGTCAACAACTTCAAATCCAAGTTACCATGTGCCACCGCAATTTGGCCTAACTCAGCATCAACAAAAGATTGGCTATAACAAGACTTTCAATGAGAATTGGTTGAGTGCTACAAAGACTCAACCTATGAAATATAGTGGAAGAGGGAAGCTTTTCAAAGGGGTGAGGCAGAGACATTGGGGAAAATGGGTTGCTGAAATTAGGCTACCAAGAAACCGGACAAGGGTTTGGTTAGGGACATTTGACACAGCTGAAGATGCCGCAATTGCATATGATACAGCAGCATATATACTAAGAGGAGAATGTGCTCAGTTGAATTTTCCTGATCTAAAGCATGTGATTCAAGCGAATTCGTTGAATGGAACAACTGCTTCACTTGTTGAGGCAAAACTTCAAGCCATATCACAACAAGGTGGTTCTTCTTCTGATAGAAAGCAAGGTGATTCACTAGCTAGATCAAGTAATAAGCATGTTGATGAGATTGAAAATGGAAAGGATCATGAAAGTATGAAGGAGTTGAAGGTTGGAGGTGACACAAATGAGAGAAGCAAAAGTATGCAGAATGAGATATGTGATGTTGAAACTGTTCAGCTAAGTAGAATGCCATCTTTAGATATGGATATCATTTGGAATGAACTTCTAGTTTCTGGTTCATGA 1104 0.375 MEDTFPKMEIFTQKELPTCLQEIVTTKESKYLEDTIIRRDSYSLTSSSISPSSPQKFFWCASNSISMKQEVAPLGLTTSNVFASDIKHGFVPLNLLETLPTLSVNPVFDETTKSIGSSSDTLKYPNLSLFLQEPSMLYSSTSHIKSNEVMSTTSNPSYHVPPQFGLTQHQQKIGYNKTFNENWLSATKTQPMKYSGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGECAQLNFPDLKHVIQANSLNGTTASLVEAKLQAISQQGGSSSDRKQGDSLARSSNKHVDEIENGKDHESMKELKVGGDTNERSKSMQNEICDVETVQLSRMPSLDMDIIWNELLVSGS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05148 367 ProSiteProfiles AP2/ERF domain profile. 200 257 IPR001471 GO:0003700|GO:0006355
Vivi1g05148 367 PRINTS Ethylene responsive element binding protein signature 223 239 IPR001471 GO:0003700|GO:0006355
Vivi1g05148 367 PRINTS Ethylene responsive element binding protein signature 201 212 IPR001471 GO:0003700|GO:0006355
Vivi1g05148 367 MobiDBLite consensus disorder prediction 284 337 - -
Vivi1g05148 367 SMART rav1_2 200 263 IPR001471 GO:0003700|GO:0006355
Vivi1g05148 367 MobiDBLite consensus disorder prediction 298 328 - -
Vivi1g05148 367 CDD AP2 199 259 IPR001471 GO:0003700|GO:0006355
Vivi1g05148 367 SUPERFAMILY DNA-binding domain 200 258 IPR016177 GO:0003677
Vivi1g05148 367 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 67 362 - -
Vivi1g05148 367 FunFam Ethylene-responsive transcription factor 2 199 258 - -
Vivi1g05148 367 Pfam AP2 domain 201 249 IPR001471 GO:0003700|GO:0006355
Vivi1g05148 367 Gene3D AP2/ERF domain 200 258 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05148 Vivi-Chr1 112193651 112195223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05148 1 362 AP2-EREBP Transcription Factor Family AT4G13620 38.481 1.32e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g05148 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05148 - - gmx:100820013 405.986