Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05138 ATGGCAGCATCACAAGAAACTTCAAGTTTGAAACTATTGAGGCAACATCTCTTAGAGGATATATCAGACTCTTTTCCCACCAATCTCAGTTCTGGAAAACTTGAACACACATCATCAGAAATTGACAAGGATTCATATTTTTCAGAACAAAACAGTTTCCTTGAAATTCTTGGTTTTGAAGCTGATACAAAAGTTACTGACTTCACTTCTCATAATAAGGCACAAAACTCAAAAGCAGAAAGTCCCTTTGATGAAACACAGAAGAGGACAGAATCAACGATGTTGGAGAAGAAAGAACAGAGATGTTACAGAGGAGTGAGGAGAAGGCCATGGGGAAAATTTGCTGCAGAGATTCGTGACCCGACAAGAAAAGGAAGCAGGGTTTGGTTAGGAACATTTGACAGTGAGATAGATGCTGCTAAGGCTTATGATTGTGCAGCTTTCAGAATGAGGGGTCAGAAAGCTATATTGAATTTTCCTTTGGAGGCAGGTGAAACTAATCCAAAGCCTAACAGTGGCAGGAAAAGGAGAACACATCACAGAGATTCTGCAACAAGTTCAAGTTAA 567 0.3968 MAASQETSSLKLLRQHLLEDISDSFPTNLSSGKLEHTSSEIDKDSYFSEQNSFLEILGFEADTKVTDFTSHNKAQNSKAESPFDETQKRTESTMLEKKEQRCYRGVRRRPWGKFAAEIRDPTRKGSRVWLGTFDSEIDAAKAYDCAAFRMRGQKAILNFPLEAGETNPKPNSGRKRRTHHRDSATSSS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05138 188 SMART rav1_2 102 166 IPR001471 GO:0003700|GO:0006355
Vivi1g05138 188 CDD AP2 103 160 IPR001471 GO:0003700|GO:0006355
Vivi1g05138 188 PANTHER DNA-BINDING DOMAIN 62 172 IPR044808 GO:0003700|GO:0009873
Vivi1g05138 188 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Vivi1g05138 188 PRINTS Ethylene responsive element binding protein signature 142 162 IPR001471 GO:0003700|GO:0006355
Vivi1g05138 188 ProSiteProfiles AP2/ERF domain profile. 102 160 IPR001471 GO:0003700|GO:0006355
Vivi1g05138 188 MobiDBLite consensus disorder prediction 73 97 - -
Vivi1g05138 188 MobiDBLite consensus disorder prediction 160 188 - -
Vivi1g05138 188 FunFam Ethylene-responsive transcription factor 2 101 162 - -
Vivi1g05138 188 MobiDBLite consensus disorder prediction 82 97 - -
Vivi1g05138 188 Pfam AP2 domain 102 152 IPR001471 GO:0003700|GO:0006355
Vivi1g05138 188 SUPERFAMILY DNA-binding domain 102 162 IPR016177 GO:0003677
Vivi1g05138 188 Gene3D AP2/ERF domain 102 162 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05138 Vivi-Chr1 112086910 112087868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05138 1 177 AP2-EREBP Transcription Factor Family AT5G07580 44.330 3.25e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g05138 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05138 - - pvu:PHAVU_007G135900g 225.328