Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05130 ATGGCGGGGAATTTCAGATTCATGATGGATCAGAACGATATCGTGAGGTTCTTGACTACAAGTATTGATAGTTTTATTCAAGATAGGTTAATCAATAAAGAGCAAAGAACGCAGCATAAAGATCAGTGTGCTGAGAGATTAGCAGCTGAAGATGGAAATGGTGAGAAAGAAAGTGAGGTTGAGTATTCCGATCAAGCGGTATTGGCGAACCTGGATTGGGGAATTGAAGCTCTTGAAGAAGCTATTAATACTTATAATATGGAAACTAAGCTTGCAAGATTGGATTATGCAGAGAAAATGTTGCAAGTGTGTGCAATGTTGAATCCTAAGCAGAAAACTGCTGGTGTGCCGAATTCGTATTTGTCTGCTTGGGCGCATTTGAATTTATCGTATTTGTGGAAGTTGAGGAACAATATTAAGAGTTGTATTTTTCATTCTCTTGAGATGTTTGTTGTTGATCCGTTTTTCTCTAGGATTGATTTCGCGCCTGAGTTATGGAAAAACCTGTTTCTTCCGCATATGAGTTCGATTGTTGGGTGGTATTCGGAGGAGAGACATAGGCTTATGATAGAAGTGATGCCAGAAAGTTCTGATTTTTCTTATACAGGTGATTTTGATCGAGTTTTCAATGAGTCTTTGGTGTTTTCTATGAGGCCGAATCAGCTTGAGAAATTACAGAAACTTGAGCAGCTTTATGGAGAGTCTTTAGATGAGAACACAAGGCTATATGCAAAATATTATAATGATTGTATGAACCCTGATTCTACCTCAAGCAAGAAGGTTGTTCCTATGTTGCCAATTGCTGAGCCGCCGATGACTCCTTTGCATGAGCTGAGTCGGTCGGTTCCTGATTTTGTTAAATTTGGTCCTATTTTGCCCAAGAGTTCTGGATTTTCTATGACAACGAGAAGATCTTATGATGGTTTAAATGAAACAGCCAGAGAGATTTTAACTTCCAATTCCAACCATTCAAAAGGGGAGAAATCATCCATGTGGGGTGCTAAGGAGAGCATAATTGAAGAGATTGAAGATGATTCAGATTCTGAGCATTATGATGCATCTGTAGATTCTGATAAAAACAATATTTTCTCACCTGAACCAAAGACGAGTATCAAGGACGAAGATATTGAGCCAAGAGTATATCGATCAAATCAGAAGAATCAAATGCAATCTCCTAATATCTCTCCTATGCAATCTCCAAGAACTGCTCCAAATTATTCATCTTCAAATCCTCAAATCCATAGTAAAAAAGAATCCAAGTTTTTGCGGTTACACTCTAATCGTTTTAGGGGCTCAACTATTTCTGATCACTCTCTATCATCATCTCCAGACATAAGCTCAGATCATATATTCAACGGCGACGAAGAAGAATCGGTCTTGAAAAATATTAAGAGAAAGAATGATAGTCAAACATCAAGTATGAATCAAGACAATGAGAATAGCCTGGTATTGAATGACAGTTCCATTGGTGAAAGTGATGATGGATATCAAAGTTCTGCTTCGTTTCCAAAATTAGAGAAACTGACTATTGGATCAAAACCACCCAAAGATTTTGTTTGTCCAATCACAGGTCAGATATTTAGTGATCCTGTCACACTTGAAACAGGCCAGACCTATGAGAAAAAAGCAATTCAAGAGTGGCTCGGAACAGGAAACACGACATGCCCTATTACGCGGCAGCCTCTATCTGCAAACATCTTACCGAAAACAAACTATGTTTTGAAGAGATTGATAGTATCATGGAGAGAACAGAATCCTGAACTAGCTCAAGAATTTTCAACTTCTAATACACCAAGAGGTTCTTCGTGTTCTCCCTCAGCAAAAGACATTGCAATGATTTCCACTACACAAAGAACGACTTATTCGCCAAGTCAGAAGAACAAAGAAGATTATATTAGACAAAGAAACAACAGATTTATGCGGGTTGCCGTCAGTGCATCTCCGACTAGTGTGTTATCTCAAGCTGCAGTTGAAACAATTATAAATTCCTTGACTCCTTACATCACAAGTCTGTGTACATCAGAAAACTTGCAGGAATGTGAAGAAGCTATAACCGAAATAGCAAGATTGTGGAAGGATTCAAAGACTGATCCTCAGATTCATTCTTATTTATCAAAGCCAACTGTCATAAGTGGTTTAGTAGAAATTCTCTCAGCTTCTCTGAATAGAGAAGTTCTGAGAAGATCAATTTATATTCTCTCAGAGCTGATTTTCGCAGACGAAAGTGTTGGAGAAACACTTAATAGTGTAGATTCTGATTTCGATTGCTTAGCTACTCTACTTAAGAACGGTTTGGCTGAGGCTGCACTTCTTATTTACCAACTAAGGCCTGTTTTTGCTCAGCTTTCGGAACACGAACTTATACCCTCTCTTATCCAAGTGATCCAGAACAAAAATGAGGATATAGACGATTTTCAGTTGGCTATAGACCCTAGAGCTGCCTCCATAGCAATTCTTGAGCAAATTTTAATGGGCGGAGACGAATATAACAGATCTGTTAATGCTTCAAGTGTTATCTCAGCAAACGGAATTCCAGCCATAGTAAAGTATTTGGACAGAACAGAAGGAAGAAGGTCTATCATTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAAAGTTGCAAGAACTCAATAGCAAATAGAATCGAATTGTCACCTGTTCTTGAATTATTTCATGCTGGAAATGATAGCGTGCGAGGAATCTGTGTAGAATTCCTCTCAGAACTGGTTCGATTGAATAGAAGGACGTTCAGCAACCAGATATTACAGATAATCAAGGATGAAGGAGCATTCAGTACAATGCATACATTTCTTGTATATCTTCAAATGGCTCCAATGGAACATCAAATTGCTGTTGCTAGTCTTCTTCTTCAGCTTGATCTTTTGGTTGAGCCGCGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACACTGATAGAAGCACTTTGGCAAAAGGACTTCTCAAATAATCAAATGAAGGCTTTAGATGCTTTACTATTTCTTATTGGACATGTAACGTCCTCAGGAAAGTCATATACTGAAGCTTGGTTGCTGAAGATTGCCGGATTTGATCAACCTTACAATGTTTTAATGAAGGCCGATCAATTAGGACACTCTGACAAAGATTTGATGGAAACAATGGAGAATGAAAAGAACGCCATGAAATCTTGGCAGAAAAGAGTAGCCTCAGTACTTTGCAATCATGAAAACGGTTCAATATTTCAAGCTTTGGAAGAATGCCTAAAGAGTAACTCCTTAAAGATGGCAAAATCTTGCCTTGTTCTTGCCACATGGCTCACACACATGCTCTTTACTCTACCTGATACTGGTGTAAGAGATATTGCTCAGAAATCCCTGCTCGAGGCCCTTATAAATGTCATCCAGTCATCCAAGAACCTAGAGGAAAAGATCCTGGCTACCCTAGCTTTGAAGTCTTTCATTAGTGATCCAACTGCTCATGAAGCACTTAGAGTCTATGCTAAAAGCATCTACAGAATCTTGAGGAAGCTGAAGAAATATTCAACAGTCGCAGCTGATATTTTGAAAGCCTTACTAAACTTAAATTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAAGAAGTAGTCGAGTTAGATTTGAGCTCAAATGGAGAGGTGCTTTCTTTGCTTTACCTCAATGGCCAGGTCTTAAGTGGACATGCTGATGGAACTATCAAGGTATGGGACGCAAGGAAGAGAATACCACGAGTAACTCAAGAAATTCGTGAGCACAAAAAAGCGGTTACATCTCTTTGTTCTTCAGTTGATAGACTATACAGTTCTTCCTTGGACAAAACAATCCGGGTTTGGACAATTAAACCCGACGGGATTAAATGTATAGATGTTTATGACGTTAAGGAAGCAGTGTATGAGCTAGCAGCTAATGCTAAATTGGCATGCTATGTAACTCAAGGAACAGGAGTTAAGGTTTTTAACTGGTCAGATCCTCCAAAGCTCATCAATTTCAACAAATATGTGAAATGCCTTGCTGTTGCTGGGGATAAATTGTATTGTGGTTGCTCTGGTTACAGCATACAGGAGGTTAACTTGTCCCAATATACATCAACTTCATTCTTCACTGGTACAAGAAAATTGTTGGGAAAACAAACCATACACTCCCTTCAAATTCATGGCGATTTCCTCTTTGCTTGTGGTTCTTCTGTTGATGCAACTGCGGGAAAGATATTTTCACTAACCTCCAAAATGGTGGTGGGATCACTCTCAACTGGACTCGATATCCATCGTGTAGCCATCAACAGTGACTTCATATTTGCTGGTACAAAGTTTGGCACCATTGAAGTTTGGTTAAAAGATAAGTTCACCCGGGTAGCTTCCATCAAAATGGCTGGTGGTCACACAAAAATTACATCATTAGTGTCAGATGCTGATGGCATGATGCTTTTTGTTGGTTCCTCTGATGGAAAGATCCAGGTTTGGGCTTTGGATTAA 4470 0.3899 MAGNFRFMMDQNDIVRFLTTSIDSFIQDRLINKEQRTQHKDQCAERLAAEDGNGEKESEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLSAWAHLNLSYLWKLRNNIKSCIFHSLEMFVVDPFFSRIDFAPELWKNLFLPHMSSIVGWYSEERHRLMIEVMPESSDFSYTGDFDRVFNESLVFSMRPNQLEKLQKLEQLYGESLDENTRLYAKYYNDCMNPDSTSSKKVVPMLPIAEPPMTPLHELSRSVPDFVKFGPILPKSSGFSMTTRRSYDGLNETAREILTSNSNHSKGEKSSMWGAKESIIEEIEDDSDSEHYDASVDSDKNNIFSPEPKTSIKDEDIEPRVYRSNQKNQMQSPNISPMQSPRTAPNYSSSNPQIHSKKESKFLRLHSNRFRGSTISDHSLSSSPDISSDHIFNGDEEESVLKNIKRKNDSQTSSMNQDNENSLVLNDSSIGESDDGYQSSASFPKLEKLTIGSKPPKDFVCPITGQIFSDPVTLETGQTYEKKAIQEWLGTGNTTCPITRQPLSANILPKTNYVLKRLIVSWREQNPELAQEFSTSNTPRGSSCSPSAKDIAMISTTQRTTYSPSQKNKEDYIRQRNNRFMRVAVSASPTSVLSQAAVETIINSLTPYITSLCTSENLQECEEAITEIARLWKDSKTDPQIHSYLSKPTVISGLVEILSASLNREVLRRSIYILSELIFADESVGETLNSVDSDFDCLATLLKNGLAEAALLIYQLRPVFAQLSEHELIPSLIQVIQNKNEDIDDFQLAIDPRAASIAILEQILMGGDEYNRSVNASSVISANGIPAIVKYLDRTEGRRSIISILLCCMQAEKSCKNSIANRIELSPVLELFHAGNDSVRGICVEFLSELVRLNRRTFSNQILQIIKDEGAFSTMHTFLVYLQMAPMEHQIAVASLLLQLDLLVEPRKMSIYREEAVETLIEALWQKDFSNNQMKALDALLFLIGHVTSSGKSYTEAWLLKIAGFDQPYNVLMKADQLGHSDKDLMETMENEKNAMKSWQKRVASVLCNHENGSIFQALEECLKSNSLKMAKSCLVLATWLTHMLFTLPDTGVRDIAQKSLLEALINVIQSSKNLEEKILATLALKSFISDPTAHEALRVYAKSIYRILRKLKKYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLLYLNGQVLSGHADGTIKVWDARKRIPRVTQEIREHKKAVTSLCSSVDRLYSSSLDKTIRVWTIKPDGIKCIDVYDVKEAVYELAANAKLACYVTQGTGVKVFNWSDPPKLINFNKYVKCLAVAGDKLYCGCSGYSIQEVNLSQYTSTSFFTGTRKLLGKQTIHSLQIHGDFLFACGSSVDATAGKIFSLTSKMVVGSLSTGLDIHRVAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGHTKITSLVSDADGMMLFVGSSDGKIQVWALD 1489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05130 1489 Pfam U-box domain 515 585 IPR003613 GO:0004842|GO:0016567
Vivi1g05130 1489 SUPERFAMILY WD40 repeat-like 1221 1488 IPR036322 GO:0005515
Vivi1g05130 1489 Gene3D - 662 939 IPR011989 -
Vivi1g05130 1489 ProSiteProfiles Trp-Asp (WD) repeats profile. 1223 1236 IPR001680 GO:0005515
Vivi1g05130 1489 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1455 1489 - -
Vivi1g05130 1489 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1488 - -
Vivi1g05130 1489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 596 IPR013083 -
Vivi1g05130 1489 SMART WD40_4 1198 1236 IPR001680 GO:0005515
Vivi1g05130 1489 SMART WD40_4 1446 1487 IPR001680 GO:0005515
Vivi1g05130 1489 SMART WD40_4 1241 1278 IPR001680 GO:0005515
Vivi1g05130 1489 MobiDBLite consensus disorder prediction 432 448 - -
Vivi1g05130 1489 SUPERFAMILY ARM repeat 660 1015 IPR016024 -
Vivi1g05130 1489 SMART Ubox_2 517 581 IPR003613 GO:0004842|GO:0016567
Vivi1g05130 1489 MobiDBLite consensus disorder prediction 382 414 - -
Vivi1g05130 1489 Pfam WD domain, G-beta repeat 1246 1277 IPR001680 GO:0005515
Vivi1g05130 1489 Pfam WD domain, G-beta repeat 1220 1236 IPR001680 GO:0005515
Vivi1g05130 1489 Pfam WD domain, G-beta repeat 1457 1486 IPR001680 GO:0005515
Vivi1g05130 1489 ProSiteProfiles U-box domain profile. 513 588 IPR003613 GO:0004842|GO:0016567
Vivi1g05130 1489 Gene3D - 1327 1489 IPR015943 GO:0005515
Vivi1g05130 1489 ProSiteProfiles Trp-Asp (WD) repeats profile. 1455 1489 IPR001680 GO:0005515
Vivi1g05130 1489 Gene3D - 1191 1326 IPR015943 GO:0005515
Vivi1g05130 1489 ProSiteProfiles Trp-Asp (WD) repeats profile. 1248 1280 IPR001680 GO:0005515
Vivi1g05130 1489 MobiDBLite consensus disorder prediction 466 500 - -
Vivi1g05130 1489 CDD RING-Ubox_PUB 515 567 IPR045210 -
Vivi1g05130 1489 SUPERFAMILY RING/U-box 513 586 - -
Vivi1g05130 1489 SUPERFAMILY Lipovitellin-phosvitin complex, superhelical domain 972 1188 IPR011030 -
Vivi1g05130 1489 MobiDBLite consensus disorder prediction 432 452 - -
Vivi1g05130 1489 MobiDBLite consensus disorder prediction 343 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05130 Vivi-Chr1 112048846 112055352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05130 504 911 U-box Gene Family AT1G23030 24.074 7.27e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05130 - - gmx:100776142 2413.65