Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05113 ATGAACAACAATAACAGCACCTCACAACCCCAAAACAACAGTTTTAACGCAAATGGATTCCCATATATCCTAACATTTGTATTTAGTCTTGTATTCTTGATTCTTACAATAGTTATTGCTTGTGTTCGACTTCGTATGTCACAAAATCGAAGCATGCTCAATATTTTGTCTGGTTTTCCACTACATCAGGAAGACTCAACCATGGAACAAGGACTTGGTGGTAATAGGGACAGAAATTTTGAAGGACACCCGAAGCTATTATACTCTCAAATTCAGAAGAATATTGGTGGCTCTTCAACTTCAAGTTGCTCTATTTGTTTAGGGGATTACGAAGAAAGTGACATGTTGAGGTTGCTTCCTAATTGTGATCATCTTTATCATGCTTCTTGTATTGATCCATGGCTTAGGCTACACTCCAATTGTCCCATTTGTAGAAAATCTTTGCTACCTTCAACCTAG 459 0.3747 MNNNNSTSQPQNNSFNANGFPYILTFVFSLVFLILTIVIACVRLRMSQNRSMLNILSGFPLHQEDSTMEQGLGGNRDRNFEGHPKLLYSQIQKNIGGSSTSSCSICLGDYEESDMLRLLPNCDHLYHASCIDPWLRLHSNCPICRKSLLPST 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05113 152 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Vivi1g05113 152 CDD RING-H2_PA-TM-RING 102 145 - -
Vivi1g05113 152 SMART ring_2 103 144 IPR001841 -
Vivi1g05113 152 SUPERFAMILY RING/U-box 102 150 - -
Vivi1g05113 152 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 151 IPR045899 -
Vivi1g05113 152 Pfam Ring finger domain 102 145 IPR001841 -
Vivi1g05113 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 151 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05113 Vivi-Chr1 111802940 111803586 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05113 63 151 C3H Transcription Factor Family AT5G06490 46.237 6.07e-26 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05113 - - psat:127093322 253.447