Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi1g05112 | ATGGTTAAACAACCTTCCAAATTCCAACTCCAAATTCTCATCCAAAAGATGAACAACAACAGCAACAGCAACGACGGTTCAGATGCAAATGGGTTCAAATATCTTCTAACATTTGTATTTGGTCTTGTATTCTTGATTCTTACAATAGTTGTTGCTTGTGTTCGACTTCGTATGTCACAAAACCGAAGCGTGCTTAATATTTTGTCTGGTTTTCCACTACATCATCAAGAAGATTCAACCATGGAACAAGGAATTGGTCGTCAACGGAGCACAAAATTTGAAGAACAACCGAAGCTATTATACTCTGAAATTCAGAAGAATATAGGTGGCTCTTCAACTTCAAGTTGTTCTATTTGTTTAGGGGACTATAAAGAAAGTGACATGTTGAGGTTGCTTCCTAATTGTGGTCATCTTTATCATGCTGCTTGTCTTGATCCATGGCTTAGGTTTCATTTCAATTGTCCCATCTGTAGAAAATCATTGTTACCTTTAACCTAG | 498 | 0.3695 | MVKQPSKFQLQILIQKMNNNSNSNDGSDANGFKYLLTFVFGLVFLILTIVVACVRLRMSQNRSVLNILSGFPLHHQEDSTMEQGIGRQRSTKFEEQPKLLYSEIQKNIGGSSTSSCSICLGDYKESDMLRLLPNCGHLYHAACLDPWLRFHFNCPICRKSLLPLT | 165 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi1g05112 | 165 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 19 | 163 | IPR045899 | - | |
| Vivi1g05112 | 165 | SMART | ring_2 | 116 | 157 | IPR001841 | - | |
| Vivi1g05112 | 165 | Pfam | Ring finger domain | 115 | 158 | IPR001841 | - | |
| Vivi1g05112 | 165 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 163 | IPR013083 | - | |
| Vivi1g05112 | 165 | SUPERFAMILY | RING/U-box | 115 | 163 | - | - | |
| Vivi1g05112 | 165 | ProSiteProfiles | Zinc finger RING-type profile. | 116 | 158 | IPR001841 | - | |
| Vivi1g05112 | 165 | CDD | RING-H2_PA-TM-RING | 115 | 158 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi1g05112 | Vivi-Chr1 | 111774060 | 111774832 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi1g05112 | 30 | 163 | C3H Transcription Factor Family | AT5G06490 | 35.256 | 6.35e-24 | 90.9 |