Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05110 ATGGAGTGTCTTTTGTTGTTGCTTCTTTGCTTTTCTACATTCTTATATGTTACTTCTGCATTGAATTTTGAGGGTTTATCTCTATTATCACTCTTGAACCACTTTACTGTTGTGCCTGCTAGCATAAACTCCACATGGAATTCCTCTCATTCCACTCCATGTTCATGGAATGGAGTTCAATGTAATCATGCCCTAAATGTAACATCTCTAAACCTAAGTGATTATTCACTTTTTGGTCAATTAGGACCTGAAATTGGAAATTTAGTTCACCTTCAAACCCTAGATTTGTCAATCAATGATCTCTCAGGTGAAATTCCACCAGAGTTGAGCAATTGTAGTATGCTTGAGTACATGGATATTTCTGTAAACAATTTCAGTGGTGAAATTCCTCAATCCTTGTTTAGTATTATTCAATTGCAAGAGTTGTATCTGAACAATAATAGTTTAAGTGGTTCAATTCCTGCTAATATTGGAAACCTTAATAACCTTTACTCGTTCGATTTCGAGAGTAATCAGTTGTCAGGGGAAATTCCGGAATCCTTGGGAAATTGTAGTCAATTGAGTTTCGTAGTTTTGGATTCTAATCAATTGGAGGGAGTTATTCCTGAGAGTCTAAACAATCTAACAGAACTTTCTTATTTAAGCGTCAATTTTAATAATCTTGAAGGTACCATTCAATTAGGTTTGAGAAATTGCAAAAAGTTAGAAATTTTGAGTCTTTCATACAATAATTTTAGTGGTGGTATTCCATCAAGTTTAGGGAATTGCAGTGGTCTGGTAGAGTTCTATGCTGCAATGAATCAGTTAGATGGTAACATACCATCAAGCTTCGGTCTGCTTCACAATCTTTCTAAGCTAATAATTCCAGCGAATCTTTTATCGGGGAATATACCTCCACAGATCGGTAATTGCAAGTCATTGGAAATGTTACATTTGTATACCAATAGACTTGATGGAGAAATTCCTAGTGAATTGGGAAAATTGAGTAAGTTACGCGATCTTCGATTGTATGAAAACCTTCTGGTAGGGGAAATTCCAGTTAGCATATGGAAAATTCAAAGCCTTGTTCATGTTCTTTTGTATAATAATAGTCTCTCAGGGGAACTACCTTCAGAGATGACTGAGCTCAAAAATCTCAAGAACGTCTCATTGTTTAACAACCGATTCTCTGGAGTTATACCTCAAACTTTAGGAATTAATAGCAGTTTGGTGCTGTTGGATTTTGTGTTTAACATGTTCAATGGCACACTTCCACCAAATCTTTGTTTTGGGAAGAAATTAGCAAGGCTTAATATGGCTGGCAATCGATTTATTGGAAGGATACCTTCTGATGTAGGAAGGTGTACAAGTCTCATAAGGTTGAGACTTGGAGATAATTATTTTACGGGCCCTCTTCCTGATTTCGCAACAAATTCGAGTATCGGTTACATGGATATCAGCAACAACAATATCAATGGAACAATTCCATCAAGTTTGAGTAACTGCACAAATCTGTCACTTTTGAATTTGTCCATGAACAGCTTAACGGGTTCTGTACCTTTAGAGCTTGGAAACCTTGTGAATCTCCAGAGTTTGCATCTTTCTTACAATAACTTAGAAGGTCCTTTGCCACCTCAACTGTCAAAGTGTACCAAAATGAGTAGTTTCGATGTGGGATTCAATTTCCTTAATGGTTCGTTTCCATCGAGTTTCCAGAGCTGGACAACATTAACCACTTTAATTCTCAGAGAGAATCGTTTTAGTGGGGGAATTCCAGCTTTCATGTCAGAATTTGAAAATCTCAACGATTTAAAACTCGGTGGAAATAATTTTGGTGGAAATATTCCTATATCAATTGGAAAAATGCAGAATTTGCGGTATGATTTGAACCTAAGTGCTAATGGACTAGTAGGCAAGCTTCCTCCGGAGATCGGAAACCTGAATAGTCTGCTAAAACTGGATCTATCTTGGAACAATTTGACAGGAAGCATACAAGTTCTCGACGAGCTCAGTTCATTAACCGAATTGAACATTTCATACAATTCTTTTGAAGGTCCTCTATCACAACAACTGATGAACTTAACGAATTCTTCTCAATCATTTTTGGGAAATCCTGGCCTGTGTGTTAACCTTTCATTGTCCAATGGTTTGAATTTCGCAAGAAGCAGCAATTTAAGCCTATGTAATCACGATGACACAAAATCAAAAAAGCTGAGTAACATTGCAATTGTGATGATAGCACTTGGATCCTCGATACTTGCCGTGCTCTTGTTAGGACTAATTTATATATTTCTAGTCAGAAGGTCTAAGCAGGAAGCCGTCATCACCGAGCAAAATGATTCTTCAAACCTTCTCAAGAAAGTGATGGAAGCTACACAGAATCTAAGTGACGAGTATATTATAGGCAGAGGAGCTGCAGGAATTGTTTACAAAGCTGTAATTAGTCCAGACAAAATTTTGGCAGTGAAGAAGCTTGTCTTCGGGGAGGATGAACGAAAACACATAAGCATGTCAAGAGAAGTTGAAGCACTTTCAAAGATTAGGCATAGAAATTTGGTGAGACTTGAACATGTTTGGTTGAGAGAAAATTATGGTCTAATCTCATACAAATACATGCCAAATGGAAGTCTTTATGAGGCTTTGCACGAGAATAATCCACCGCAGTCCTTAAACTGGAACATAAGAAATAAGATAGCTGTTGGAATTGCTCAGAGTTTGGTTTATCTTCATTTTGACTGTGATCCTGTCATAGTTCATAGAGACATCAAAACATGCAATATACTTTTAGATTCTGAAATGGAGCCTCATGTTACTGATTTCGGTCTTGCTAAGATTTTGCACCGATCGTCTAGTTCTACCTCAGCACAGTCGATAAATGTTTCTGGTACACTTGGCTATATTGCACCAGAGAATGCTTATACAAGAGCAAAGGGTAAGGAATCTGATGTGTACAGTTATGGCGTAGTTTTGCTAGAGTTGATATCAAGAAAAAAGGCAATAGACCCATCATTTATGGAAGGAATGGATTTAGTTACTTGGGTGAGATCTTTGTGGGAAGAAGCAGGAGTTGTTGATGAAATTGTTGATTCAGAACTTGCCAATGAAATTTCAAATTCTAATAAAGTGATGAAGGAAGTAACCAAAGTGCTTATGGTGGCTTTGAGATGTACAGAAAGTGATCCACGGAAGAGACCTACAATGAGAGATGTTATCAAGAATTTGTAG 3204 0.3714 MECLLLLLLCFSTFLYVTSALNFEGLSLLSLLNHFTVVPASINSTWNSSHSTPCSWNGVQCNHALNVTSLNLSDYSLFGQLGPEIGNLVHLQTLDLSINDLSGEIPPELSNCSMLEYMDISVNNFSGEIPQSLFSIIQLQELYLNNNSLSGSIPANIGNLNNLYSFDFESNQLSGEIPESLGNCSQLSFVVLDSNQLEGVIPESLNNLTELSYLSVNFNNLEGTIQLGLRNCKKLEILSLSYNNFSGGIPSSLGNCSGLVEFYAAMNQLDGNIPSSFGLLHNLSKLIIPANLLSGNIPPQIGNCKSLEMLHLYTNRLDGEIPSELGKLSKLRDLRLYENLLVGEIPVSIWKIQSLVHVLLYNNSLSGELPSEMTELKNLKNVSLFNNRFSGVIPQTLGINSSLVLLDFVFNMFNGTLPPNLCFGKKLARLNMAGNRFIGRIPSDVGRCTSLIRLRLGDNYFTGPLPDFATNSSIGYMDISNNNINGTIPSSLSNCTNLSLLNLSMNSLTGSVPLELGNLVNLQSLHLSYNNLEGPLPPQLSKCTKMSSFDVGFNFLNGSFPSSFQSWTTLTTLILRENRFSGGIPAFMSEFENLNDLKLGGNNFGGNIPISIGKMQNLRYDLNLSANGLVGKLPPEIGNLNSLLKLDLSWNNLTGSIQVLDELSSLTELNISYNSFEGPLSQQLMNLTNSSQSFLGNPGLCVNLSLSNGLNFARSSNLSLCNHDDTKSKKLSNIAIVMIALGSSILAVLLLGLIYIFLVRRSKQEAVITEQNDSSNLLKKVMEATQNLSDEYIIGRGAAGIVYKAVISPDKILAVKKLVFGEDERKHISMSREVEALSKIRHRNLVRLEHVWLRENYGLISYKYMPNGSLYEALHENNPPQSLNWNIRNKIAVGIAQSLVYLHFDCDPVIVHRDIKTCNILLDSEMEPHVTDFGLAKILHRSSSSTSAQSINVSGTLGYIAPENAYTRAKGKESDVYSYGVVLLELISRKKAIDPSFMEGMDLVTWVRSLWEEAGVVDEIVDSELANEISNSNKVMKEVTKVLMVALRCTESDPRKRPTMRDVIKNL 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05110 1067 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 426 710 - -
Vivi1g05110 1067 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 192 425 - -
Vivi1g05110 1067 SUPERFAMILY L domain-like 593 705 - -
Vivi1g05110 1067 SMART LRR_typ_2 328 352 IPR003591 -
Vivi1g05110 1067 SMART LRR_typ_2 88 112 IPR003591 -
Vivi1g05110 1067 SMART LRR_typ_2 519 543 IPR003591 -
Vivi1g05110 1067 SMART LRR_typ_2 208 232 IPR003591 -
Vivi1g05110 1067 SMART LRR_typ_2 136 160 IPR003591 -
Vivi1g05110 1067 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 20 175 - -
Vivi1g05110 1067 Pfam Protein kinase domain 791 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05110 1067 Gene3D Ribonuclease Inhibitor 178 270 IPR032675 -
Vivi1g05110 1067 Gene3D Phosphorylase Kinase; domain 1 756 864 - -
Vivi1g05110 1067 Pfam Leucine rich repeat 477 532 IPR001611 GO:0005515
Vivi1g05110 1067 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 756 864 - -
Vivi1g05110 1067 Gene3D Transferase(Phosphotransferase) domain 1 865 1067 - -
Vivi1g05110 1067 Gene3D Ribonuclease Inhibitor 472 711 IPR032675 -
Vivi1g05110 1067 Gene3D Ribonuclease Inhibitor 271 371 IPR032675 -
Vivi1g05110 1067 ProSitePatterns Serine/Threonine protein kinases active-site signature. 910 922 IPR008271 GO:0004672|GO:0006468
Vivi1g05110 1067 ProSiteProfiles Leucine-rich repeat profile. 642 664 IPR001611 GO:0005515
Vivi1g05110 1067 SUPERFAMILY Protein kinase-like (PK-like) 775 1066 IPR011009 -
Vivi1g05110 1067 Gene3D Ribonuclease Inhibitor 22 177 IPR032675 -
Vivi1g05110 1067 FunFam Serine/threonine-protein kinase-like protein CCR4 865 1067 - -
Vivi1g05110 1067 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 530 1067 - -
Vivi1g05110 1067 SMART serkin_6 788 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05110 1067 ProSiteProfiles Protein kinase domain profile. 788 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g05110 1067 Gene3D Ribonuclease Inhibitor 372 471 IPR032675 -
Vivi1g05110 1067 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Vivi1g05110 1067 SUPERFAMILY RNI-like 69 390 - -
Vivi1g05110 1067 SUPERFAMILY RNI-like 273 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05110 Vivi-Chr1 111709014 111712725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05110 12 1065 Receptor kinase-like Gene Family AT1G73080 48.720 0.0 950
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi1g05110 Pkinase 3.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05110 - - gmx:100817655 1449.88