Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05102 ATGGTAGTGGTTGTAGATTACGCCGATAGAGAAAATGAAGGGGACCTAAGAATGGAAACACAATTGGCAACACCTGAGGCTATAGCTTTTATTGTTGCTGCACTCTTCCAAGACCACCCAGATCTTCTTGATGGGTTTATTCATTTTCTTCTTAATGTTTCCGCAGCTGCCTCTGCTCATACTGTTGCTCAGAATTATGGGTTTCGAGATAGGAGCTCTGCATTGCCTATAGTGCGGCAACTGCATGTTGAAAAGCCTGACCCAGATGGTAGGAGGACTGTGATAACTTGTGCAGCATGTGGTGGGCATTTGGGTCATGTATTCAAGGGAGAAGGGTTCAAGGTTTCAACAGATGAACGCCATTGCGTCAATAATGTTTCTGTCAAATTTGTTCCTGGAAATGCTGCTTCTTCCATATAA 420 0.4381 MVVVVDYADRENEGDLRMETQLATPEAIAFIVAALFQDHPDLLDGFIHFLLNVSAAASAHTVAQNYGFRDRSSALPIVRQLHVEKPDPDGRRTVITCAACGGHLGHVFKGEGFKVSTDERHCVNNVSVKFVPGNAASSI 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05102 139 PANTHER PEPTIDE METHIONINE SULFOXIDE REDUCTASE 2 84 137 IPR028427 GO:0006979|GO:0016671|GO:0030091
Vivi1g05102 139 SUPERFAMILY YrdC/RibB 1 33 IPR017945 -
Vivi1g05102 139 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 83 133 IPR002579 GO:0033743
Vivi1g05102 139 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 1 32 IPR000422 GO:0008686|GO:0009231
Vivi1g05102 139 Gene3D Peptide methionine sulfoxide reductase. 62 131 - -
Vivi1g05102 139 Pfam Paired amphipathic helix repeat 32 50 IPR003822 GO:0006355
Vivi1g05102 139 Pfam SelR domain 90 132 IPR002579 GO:0033743
Vivi1g05102 139 Gene3D DHBP synthase 1 61 - -
Vivi1g05102 139 SUPERFAMILY Mss4-like 87 134 IPR011057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05102 Vivi-Chr1 111649234 111650560 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi1g05102 SelR 4.1e-13 CL0080
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05102 K07305 - gmx:100499893 108.997