Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05099 ATGTCTTCTGGAACGGTAGTGAGGATTCAGGGCCAACCTTTGGAGGTCACGGTGGTTTCTTGCACGAAATTGAAGGATACTGAATGGATTTCAAGACAAGATCCCTACGTTTGCCTTGAATACGCTTCCACCAAATTCCGAACAAGAACATCCACAGGCGGTGGAAAACATCCGGTGTTTCAAGAGAAGTTCGTGGTGCCGTTAATTGAAGGTCTTCGTGAACTCACTGTTGTTGTTTGGAACAGCAATACTGTCACATTCGATAATTTTATCGGCACCGGAAAGGTTCAATTGAACCAAGTTCTGTCTCAAGGTTTTGATGATTCTTCTTGGCCACTTCAAACTAAATCTGGCAGAGCTTCCAAAAGTGAAGTGATATCTAGTGGAATAAATGGAACTAGAAATGGTGCTCTTCAACTGATGCAAGCTAAACTTCAAGTATTTTCTCTGTTGGTTCTAGTTAAAGAAGTGAATTTTCTACGTTTTTGCAAGCAACATGCAAAGGGGTATCGGCAGTGGCTGATGTGCTGA 531 0.4237 MSSGTVVRIQGQPLEVTVVSCTKLKDTEWISRQDPYVCLEYASTKFRTRTSTGGGKHPVFQEKFVVPLIEGLRELTVVVWNSNTVTFDNFIGTGKVQLNQVLSQGFDDSSWPLQTKSGRASKSEVISSGINGTRNGALQLMQAKLQVFSLLVLVKEVNFLRFCKQHAKGYRQWLMC 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05099 176 Gene3D C2 domain 12 129 IPR035892 -
Vivi1g05099 176 ProSiteProfiles C2 domain profile. 1 112 IPR000008 -
Vivi1g05099 176 SMART C2_3c 13 110 IPR000008 -
Vivi1g05099 176 Pfam START domain 102 169 IPR002913 GO:0008289
Vivi1g05099 176 Pfam C2 domain 14 105 IPR000008 -
Vivi1g05099 176 CDD C2 14 111 - -
Vivi1g05099 176 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 119 IPR035892 -
Vivi1g05099 176 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU_ORTHOLOGUE AFUA_2G01790) 8 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05099 Vivi-Chr1 111586702 111588059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05099 118 169 Homeobox Transcription Factor Family AT4G00730 67.308 2.57e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05099 - - vvo:131651622 356.295