Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05098 ATGTTTTCTAGGTTGCTACGTCCTCACGACCATGAAGGAAATGTTGGTGTTGTTCAGGAAGACACAAATCATCACCACAACCACCTTGCTGACCCTTGTCTTGTTCTCACTTCTGATCCAAAACCTCGTCTTCGTTGGACTACTGACCTTCACCAACGCTTTGTTGATGCTGTTACTCAACTCGGTGGACCAAGCAAAGCCACGCCAAAAGCAATCATGAGGACCATGAATGTCAAGGGTTTGACACTCTATCACTTAAAGAGTCATCTTCAGAAGTACAGGCTTGGTAAACAAGCTGGAAAAGATTCTGACGAGGGCTGTAAAGATGGTTCATATCTTCTAGAAAGCCCCGGTACTGAAAACTCGTCTCCTAAATTACTAGCTTCTGATGCAAATGAGGGTCATGAAGTCAAGGAGGCTTTAAGAGCCCAGATGGAAGTGCAAAGTAAGCTACATTTACTAGTGGAGGCAGAGAAGCACCTGCTAATTCGCCAAGATGCAGAACGGAGATATATGGCCATGCTTGAGAGAGCTTGTAAGATGTTAGCTGACCAATTTATTGGTGATACAACAATAGACACTGACATCCAAAAATTTCAAGAACTACCAAGTATCGAGCTAGGTGGAATGCATGTTTCAGACGTACCATACATTCTCCAGCCCCAAGGGGCTAACTGTTCTACTGAAAGTTGCCTAACATCCCTTGAGAGTCTACGAGGATTGACACTAGAAGGATCTCCTGGCGGGTCAAAGAGGATGGTGGGATTGGACTCAATGGTATCACCTTTGATGTGGAGTGAAACTAACATGAGAACTCAAGGCATTCATTTAGCCCAAGTGAATCCTCAAGGAATAGCAAGGTATGGAATGTAG 873 0.4433 MFSRLLRPHDHEGNVGVVQEDTNHHHNHLADPCLVLTSDPKPRLRWTTDLHQRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQAGKDSDEGCKDGSYLLESPGTENSSPKLLASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLLIRQDAERRYMAMLERACKMLADQFIGDTTIDTDIQKFQELPSIELGGMHVSDVPYILQPQGANCSTESCLTSLESLRGLTLEGSPGGSKRMVGLDSMVSPLMWSETNMRTQGIHLAQVNPQGIARYGM 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05098 290 Gene3D - 40 98 - -
Vivi1g05098 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 98 IPR017930 -
Vivi1g05098 290 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 11 203 IPR044848 GO:0003700
Vivi1g05098 290 NCBIfam myb-like DNA-binding domain, SHAQKYF class 41 96 IPR006447 GO:0003677
Vivi1g05098 290 MobiDBLite consensus disorder prediction 97 126 - -
Vivi1g05098 290 FunFam Myb family transcription factor 40 98 - -
Vivi1g05098 290 Pfam Myb-like DNA-binding domain 44 94 IPR001005 -
Vivi1g05098 290 Pfam MYB-CC type transfactor, LHEQLE motif 136 181 IPR025756 -
Vivi1g05098 290 SUPERFAMILY Homeodomain-like 41 96 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05098 Vivi-Chr1 111561153 111564774 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05098 27 235 G2-like Transcription Factor Family AT3G24120 48.305 8.84e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi1g05098 Myb_DNA-binding 7.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05098 - - vum:124825518 446.817