Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05097 ATGTTTTCTAGGTTGCTACGTCCTCACGACCATGAAGGAAATGTTGGTGTTGTTCAGGAAGACACAAATCATCACCACAACCACCTTGCTGACCCTTGTCTTGTTCTCACTTCTGATCCAAAACCTCGTCTTCGTTGGACTACTGACCTTCACCAACGCTTTGTTGATGCTGTTACTCAACTCGGTGGACCAAGCAAAGCCACGCCAAAAGCAATCATGAGGACCATGAATGTCAAGGGTTTGACACTCTATCACTTAAAGAGTCATCTTCAGAAGTACAGGCTTGGTAAACAAGCTGGAAAAGATTCTGACGAGGGCTGTAAAGATGGAATATCAGGTTCATATCTTCTAGAAAGCCCCGGTACTGAAAACTCGTCTCCTAAATTACTAGCTTCTGATGCAAATGAGGGTCATGAAGTCAAGGAGGCTTTAAGAGCCCAGATGGAAGTGCAAAGTAAGCTACATTTACTAGTGGAGGCAGAGAAGCACCTGCTAATTCGCCAAGATGCAGAACGGAGATATATGGCCATGCTTGAGAGAGCTTGTAAGATGTTAGCTGACCAATTTATTGGTGATACAACAATAGACACTGACATCCAAAAATTTCAAGAACTACCAAGTATCGAGCTAGGTGGAATGCATGTTTCAGACGTACCATACATTCTCCAGCCCCAAGGGGCTAACTGTTCTACTGAAAGTTGCCTAACATCCCTTGAGAGTCTACGAGGATTGACACTAGAAGGATCTCCTGGCGGGTCAAAGAGGATGGTGGGATTGGACTCAATGGTATCACCTTTGATGTGGAGTGAAACTAACATGAGAACTCAAGGCATTCATTTAGCCCAAGTGAATCCTCAAGGAATAGCAAGGTATGGAATGTAG 882 0.4422 MFSRLLRPHDHEGNVGVVQEDTNHHHNHLADPCLVLTSDPKPRLRWTTDLHQRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQAGKDSDEGCKDGISGSYLLESPGTENSSPKLLASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLLIRQDAERRYMAMLERACKMLADQFIGDTTIDTDIQKFQELPSIELGGMHVSDVPYILQPQGANCSTESCLTSLESLRGLTLEGSPGGSKRMVGLDSMVSPLMWSETNMRTQGIHLAQVNPQGIARYGM 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05097 293 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 11 206 IPR044848 GO:0003700
Vivi1g05097 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 98 IPR017930 -
Vivi1g05097 293 Pfam MYB-CC type transfactor, LHEQLE motif 139 184 IPR025756 -
Vivi1g05097 293 MobiDBLite consensus disorder prediction 111 130 - -
Vivi1g05097 293 Gene3D - 40 98 - -
Vivi1g05097 293 FunFam Myb family transcription factor 40 98 - -
Vivi1g05097 293 SUPERFAMILY Homeodomain-like 41 96 IPR009057 -
Vivi1g05097 293 NCBIfam myb-like DNA-binding domain, SHAQKYF class 41 96 IPR006447 GO:0003677
Vivi1g05097 293 Pfam Myb-like DNA-binding domain 44 94 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05097 Vivi-Chr1 111561153 111564775 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05097 27 238 G2-like Transcription Factor Family AT3G24120 46.610 2.38e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi1g05097 Myb_DNA-binding 8.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05097 - - vum:124825518 456.447