Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05086 ATGGAACCTGCCCATGATCATCATCAACATAATCATCATCAACATGATCATCATCAGCATGATCATCATCAACATGATCATCAACAGCAACAGCAACAACAACTCTCTTTAGCCTCTAAGGAACTCAGCAATATCATCAAAGGGAAAAGAACCAAAAGGGTTAGGCCCCAATCTCCTATTCCTTTTTCCATCACTGCTAATTCTTCAACTGGAGAAGGAGGTGGAGTAACAGGTGAAAGAGAAGATTGTTACAACAATGGTGATGATGTTGTCAACAACAACAATATCAATGTCATCCATAACAACAACAATACCTCTCCGACAACATCTTATGTTGAAGAGAAACAGGACAGTGTTATGGATGACGAGGAACATGATATGGCAAACTGTTTGATTCTATTGGCACAGGGACAATCTAAGGAATCACCGAAAACTACTGATGAATTAGACGGTGGAATGATGAACTATGCGAAATACAGCAGTAGAAAGTTCATGGAAGCTGCTAGTTTGGATTCTGGAAGAGCTGGTTTCTATGTCTATGAATGCAAAACATGTAACAGAACTTTCCCTTCTTTTCAAGCACTTGGTGGCCATAGAGCGAGTCACAAAAAGCCGAAAGCATTGGCAATTGCTCAAGAGAGGAAACAGTTTTTCGATGATGATCAAGAGTTTCAATTCAAACCGAATCATAAACCAATTTCCCTTCAATTGAATAACAATGGTAAGGGAAATCTATACGGTGGAAACAACAATGGCAATAGCAGCAACAACAACAAGTCTAAGGTTCATGAGTGTTCCATTTGTGGTTCTGAATTCACATCTGGACAAGCACTTGGTGGGCACATGAGGCGCCACCGCGCGCCCGTGGGGACATCAACTGCCAACACCACACTGTCATTGACACCAATGGCTTTAGAGCCTGATGAAGATCATCAACCTAGAAAGAAAAGGAATGTTCTGTCTTTGGATTTGGATCTCAATCTTCCTGCACCTGAAGATGATCAGAAAGAATCAAAGTTTGCCTTTGCTTCCAAGCAACATCAACAACAACAACAACATGGACAAAAACAACAGCAACAACAGCAGCAGCAGCAACAGCAACAACAGCAGCAACAGCAACAAACAAATCTTGTCTTCTCCGCACCAGCTTTGGTAGATTGTCATTACTAA 1170 0.4128 MEPAHDHHQHNHHQHDHHQHDHHQHDHQQQQQQQLSLASKELSNIIKGKRTKRVRPQSPIPFSITANSSTGEGGGVTGEREDCYNNGDDVVNNNNINVIHNNNNTSPTTSYVEEKQDSVMDDEEHDMANCLILLAQGQSKESPKTTDELDGGMMNYAKYSSRKFMEAASLDSGRAGFYVYECKTCNRTFPSFQALGGHRASHKKPKALAIAQERKQFFDDDQEFQFKPNHKPISLQLNNNGKGNLYGGNNNGNSSNNNKSKVHECSICGSEFTSGQALGGHMRRHRAPVGTSTANTTLSLTPMALEPDEDHQPRKKRNVLSLDLDLNLPAPEDDQKESKFAFASKQHQQQQQHGQKQQQQQQQQQQQQQQQQQQTNLVFSAPALVDCHY 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05086 389 MobiDBLite consensus disorder prediction 307 321 - -
Vivi1g05086 389 PANTHER ZINC FINGER PROTEIN ZAT5 69 360 - -
Vivi1g05086 389 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Vivi1g05086 389 ProSitePatterns Zinc finger C2H2 type domain signature. 265 285 IPR013087 -
Vivi1g05086 389 Gene3D Classic Zinc Finger 178 285 - -
Vivi1g05086 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
Vivi1g05086 389 MobiDBLite consensus disorder prediction 58 74 - -
Vivi1g05086 389 SUPERFAMILY beta-beta-alpha zinc fingers 179 285 IPR036236 -
Vivi1g05086 389 MobiDBLite consensus disorder prediction 342 374 - -
Vivi1g05086 389 Pfam C2H2-type zinc finger 179 205 - -
Vivi1g05086 389 Pfam C2H2-type zinc finger 262 288 - -
Vivi1g05086 389 SMART c2h2final6 180 202 IPR013087 -
Vivi1g05086 389 SMART c2h2final6 263 285 IPR013087 -
Vivi1g05086 389 MobiDBLite consensus disorder prediction 1 77 - -
Vivi1g05086 389 MobiDBLite consensus disorder prediction 231 262 - -
Vivi1g05086 389 MobiDBLite consensus disorder prediction 276 374 - -
Vivi1g05086 389 Coils Coil 356 376 - -
Vivi1g05086 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 285 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05086 Vivi-Chr1 111364163 111366089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05086 38 389 C2H2 Transcription Factor Family AT5G04390 44.357 2.49e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g05086 zf-C2H2_6 9.4e-12 CL0361