Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05084 ATGACGAGAAGGAAGGTGAAACTTGCATTTATCTGTGATGATACAGCAAGAAAGGCAAGCTACAATAAAAGAAAGAAAGGTCTGATCAAGAAGGTAAGAGAACTCACAACTCTTTGTGGTATTCCAGCTTGTGCTATAATTTCGAGTCCCTTTGATTCTCAACCAGAGGTGTGGCCAAATCTAGAAGGAGCCATGAATGTGATTGATAGGTACAAAAATTCATCTGTGAAAGATGAAAACAGGAATGTGAACCAAGAGAGATTCCTCACGCAGAGGATTACCAAAGCTAGAGATCAGGTAAGAAAGTTGAAATATGACAACCGCGAACAAGAGTTGAATCTTCTCATGTTTGGTTACTTGCAAAACAACAATATTTCTGATGATTTAACTTCTGAAGAGTTGAAAGATTTTGATAAGCTAGTTGAGAAGAAGCTGAAGGAGGTTGATATTAAAATTAAGAAACTTGATGCATGA 474 0.3713 MTRRKVKLAFICDDTARKASYNKRKKGLIKKVRELTTLCGIPACAIISSPFDSQPEVWPNLEGAMNVIDRYKNSSVKDENRNVNQERFLTQRITKARDQVRKLKYDNREQELNLLMFGYLQNNNISDDLTSEELKDFDKLVEKKLKEVDIKIKKLDA 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05084 157 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi1g05084 157 PANTHER MADS BOX PROTEIN 3 152 - -
Vivi1g05084 157 Coils Coil 93 113 - -
Vivi1g05084 157 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi1g05084 157 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi1g05084 157 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Vivi1g05084 157 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi1g05084 157 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Vivi1g05084 157 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Vivi1g05084 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Vivi1g05084 157 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05084 Vivi-Chr1 111283021 111283494 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05084 1 155 MADS-box Gene Family AT5G26630 45.513 2.68e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi1g05084 SRF-TF 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05084 - - var:108325536 169.474