Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05059 ATGAACATTCATGATGCAGAGTTTAGAAAAATGGGTTATTTCATTTTATTTCTTGTATGCTTGATAATTGTAACCCTTATAGTTACAATTGCCTCTTATCTATGCACTCTACCAACTTTTTCACCTCTACCTCCACAGCTTGCACGTGAAACAAACCACACCACAATAACTGTAGTAGTGGATCAACCAGCTGACCAAAATACTGCAAATGTGTGTAGAAGCTATGATCAAATTAGTACCCTTCCACGTTTATCTGAAGTTAAGATGTGTAACAGCAATAATATTAATTCTGTTAGTAGTTGTTGCTGTTCCATATGTTTGATGGATTATAGAGAAGCTGATTTGTTGAGAATGCTTCCTGGTTGTGGACATTTCTTTCATGTGGCTTGTGTTGATCCTTGGTTGAGAATGAATTTGACTTGTCCGGTTTGTAGGAAGACATATCGTTCTGTATAA 456 0.3618 MNIHDAEFRKMGYFILFLVCLIIVTLIVTIASYLCTLPTFSPLPPQLARETNHTTITVVVDQPADQNTANVCRSYDQISTLPRLSEVKMCNSNNINSVSSCCCSICLMDYREADLLRMLPGCGHFFHVACVDPWLRMNLTCPVCRKTYRSV 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05059 151 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Vivi1g05059 151 Pfam Ring finger domain 103 145 IPR001841 -
Vivi1g05059 151 SMART ring_2 103 144 IPR001841 -
Vivi1g05059 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 150 IPR013083 -
Vivi1g05059 151 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 147 IPR045899 -
Vivi1g05059 151 SUPERFAMILY RING/U-box 102 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05059 Vivi-Chr1 110994204 110994659 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05059 11 147 C3H Transcription Factor Family AT5G06490 33.113 2.77e-20 80.9