Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05058 ATGAACAACAATAACAGCACCTCACAACCCCAAAACAACAGTTTTAACGCAAATGGATTCCCATATATCCTAACATTTGTATTTAGTCTTGTATTCTTGATTCTTACAATAGTTATTGCTTGTGTTCGACTTCGTATGTCACAAAATCGAAGCATGCTCAATATTTTGTCTGGTTTTCCACTACATCATCAAGAAGACTCAACCATGGAACAAGGACTTGGTGGTAATAGGGACAGAAATTTTGAAGGACACCCGAAGCTATTATACTCTCAAATTCAGAAGAATATTGGTGGCTCTTCAACTTCAAGTTGCTCTATTTGTTTAGGGGATTACGAAGAAAGTGACATGTTGAGGTTGCTTCCTAATTGTGATCATCTTTATCATGCTTCTTGTATTGATCCATGGCTTAGGCTACACTCCAATTGTCCCATTTGTAGAAAATCTTTGCTACCTTCAACCTAG 462 0.3723 MNNNNSTSQPQNNSFNANGFPYILTFVFSLVFLILTIVIACVRLRMSQNRSMLNILSGFPLHHQEDSTMEQGLGGNRDRNFEGHPKLLYSQIQKNIGGSSTSSCSICLGDYEESDMLRLLPNCDHLYHASCIDPWLRLHSNCPICRKSLLPST 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05058 153 Pfam Ring finger domain 103 146 IPR001841 -
Vivi1g05058 153 SMART ring_2 104 145 IPR001841 -
Vivi1g05058 153 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 152 IPR045899 -
Vivi1g05058 153 SUPERFAMILY RING/U-box 103 151 - -
Vivi1g05058 153 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Vivi1g05058 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 152 IPR013083 -
Vivi1g05058 153 CDD RING-H2_PA-TM-RING 103 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05058 Vivi-Chr1 110968822 110969345 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05058 12 152 C3H Transcription Factor Family AT5G06490 34.969 5.55e-27 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05058 - - psat:127093322 258.07