Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05056 ATGTGCAATAATTGCTCAGCAATGGTTAAACAACCTTCCAAATTCCAACTCCAAATTCTCATCCAAAAGATGAACAACAACAGCAACAGCAACGACGGTTCTGATGCAAATGGGTTCAAATATCTTCTAACATTTGTATTTGGTCTTGTATTCTTGATTCTTACAATAGTTGTTGCTTGTGTTCGACTTCGTATGTCACAAAATCGAAGCGTGCTCAATATTTTGTCTGGTTTTCCACTACATCATCAAGAAGACTCAACCATGGAACAAGGACTTGGTCGTCATAGGAGCACAAAATTTGAAGAACAACCGAAGCTATTATACTCTGAAATTCAGAAGAATATAGGTGGCTCTTCAACTTCAAGTTGTTCTATTTGTTTAGGGGACTATAAAGAAAGTGACATGTTGAGGTTGCTTCCTAATTGTGGTCATCTTTTTCATGCTGCTTGTCTTGATCCATGGCTTAGGTTTCATTTCAATTGTCCCATTTGTAGAAAATCATTGTTACCTTTAACCTAG 519 0.3699 MCNNCSAMVKQPSKFQLQILIQKMNNNSNSNDGSDANGFKYLLTFVFGLVFLILTIVVACVRLRMSQNRSVLNILSGFPLHHQEDSTMEQGLGRHRSTKFEEQPKLLYSEIQKNIGGSSTSSCSICLGDYKESDMLRLLPNCGHLFHAACLDPWLRFHFNCPICRKSLLPLT 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05056 172 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Vivi1g05056 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 170 IPR013083 -
Vivi1g05056 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 26 170 IPR045899 -
Vivi1g05056 172 SMART ring_2 123 164 IPR001841 -
Vivi1g05056 172 SUPERFAMILY RING/U-box 122 170 - -
Vivi1g05056 172 Pfam Ring finger domain 122 165 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05056 Vivi-Chr1 110933320 110934099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g05056 37 170 C3H Transcription Factor Family AT5G06490 36.943 5.08e-24 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05056 - - vvo:131614318 343.969